Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 3.3e-141 505.0 249 100.0
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.3e-52 210.7 310 48.1
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.0e-49 201.1 313 45.7
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 9.4e-35 151.4 220 48.6
Sed0012398 Sechium edule HOM05D004520 ORTHO05D005520 3.7e-23 112.8 210 39.5
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.4e-19 100.9 162 40.1
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.3e-17 93.6 159 39.6
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 7.4e-16 88.6 199 33.2
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 7.4e-16 88.6 158 37.3
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 2.8e-15 86.7 211 32.2
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 2.0e-13 80.5 142 38.0
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 5.9e-13 79.0 136 42.6
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.0e-12 78.2 149 38.9
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.7e-12 77.4 140 37.9
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 8.5e-12 75.1 254 30.3
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.9e-11 73.9 141 37.6
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.2e-11 72.8 141 37.6
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 7.2e-11 72.0 141 36.9
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.1e-10 70.5 110 40.0
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 2.7e-10 70.1 195 30.3
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.7e-10 70.1 178 33.7
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.6e-10 69.7 232 30.2
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.6e-10 69.7 112 40.2
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 6.1e-10 68.9 213 30.5
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.0e-09 68.2 153 35.9
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.4e-09 67.8 192 31.8
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 1.8e-09 67.4 95 36.8
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 1.8e-09 67.4 95 36.8
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.3e-09 67.0 153 32.0
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 4.0e-09 66.2 146 32.2
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 4.0e-09 66.2 118 38.1
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 5.2e-09 65.9 144 32.6
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.5e-08 64.3 158 35.4
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 1.5e-08 64.3 135 32.6
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 2.0e-08 63.9 145 31.0
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.6e-08 63.5 162 32.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.6e-08 63.5 137 34.3
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 3.3e-08 63.2 155 31.0
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 3.3e-08 63.2 138 35.5
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 4.4e-08 62.8 153 35.3
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 5.7e-08 62.4 189 31.2
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 5.7e-08 62.4 157 34.4
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 5.7e-08 62.4 191 31.4
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.5e-08 62.0 137 34.3
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 9.7e-08 61.6 187 32.6
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.7e-08 61.6 152 32.9
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 9.7e-08 61.6 167 32.3
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-07 61.2 149 33.6
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 1.3e-07 61.2 147 32.0
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.7e-07 60.8 168 33.3
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.7e-07 60.8 107 35.5
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.7e-07 60.8 116 37.9
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 2.2e-07 60.5 114 39.5
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 2.2e-07 60.5 162 34.0
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 2.2e-07 60.5 162 34.0
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 2.2e-07 60.5 141 34.0
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 2.8e-07 60.1 156 32.1
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 2.8e-07 60.1 162 34.0
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 2.8e-07 60.1 119 37.8
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 2.8e-07 60.1 123 35.8
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 4.8e-07 59.3 138 37.7
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 4.8e-07 59.3 145 35.2
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.8e-07 59.3 119 37.8
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 4.8e-07 59.3 129 31.0
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 6.3e-07 58.9 86 38.4
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.3e-07 58.9 141 36.2
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 8.2e-07 58.5 184 31.5
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 8.2e-07 58.5 184 31.5
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 8.2e-07 58.5 136 34.6
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 8.2e-07 58.5 102 38.2
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 8.2e-07 58.5 135 34.1
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.1e-06 58.2 169 32.5
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.4e-06 57.8 136 33.8
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-06 57.8 137 31.4
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.4e-06 57.8 105 37.1
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.4e-06 57.8 176 30.7
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.8e-06 57.4 79 41.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.4e-06 57.0 174 29.9
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 2.4e-06 57.0 125 33.6
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 2.4e-06 57.0 166 30.7
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.4e-06 57.0 152 31.6
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 3.1e-06 56.6 122 36.9
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 3.1e-06 56.6 120 35.0
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 3.1e-06 56.6 84 41.7
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 3.1e-06 56.6 117 30.8
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 4.1e-06 56.2 151 33.1
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 5.3e-06 55.8 123 36.6
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.3e-06 55.8 136 34.6
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 5.3e-06 55.8 79 41.8
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 5.3e-06 55.8 137 31.4
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 7.0e-06 55.5 168 33.9
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 7.0e-06 55.5 110 30.9
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 7.0e-06 55.5 185 31.4
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 7.0e-06 55.5 182 33.0
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.0e-06 55.5 182 33.0
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.0e-06 55.5 124 36.3
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.1e-06 55.1 182 33.0


User provided reference genes

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