Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 5.0e-265 917.1 444 100.0
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 2.8e-231 805.1 435 90.3
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.7e-228 795.8 504 80.0
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 6.0e-226 787.3 447 86.8
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 2.9e-196 688.7 435 75.9
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.8e-191 672.2 437 73.9
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.1e-190 668.7 435 72.6
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.0e-188 663.7 435 73.3
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 5.0e-188 661.4 433 73.0
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.4e-187 659.8 437 73.5
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.2e-187 658.7 435 72.9
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 3.2e-187 658.7 435 72.9
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.6e-186 654.8 437 72.1
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.0e-185 653.7 433 72.7
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 1.0e-185 653.7 438 71.7
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.4e-185 653.3 436 71.3
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 3.0e-185 652.1 440 71.1
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 6.7e-185 651.0 438 72.1
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.5e-184 649.0 434 72.1
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.5e-184 649.0 439 72.4
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.3e-184 648.7 434 72.6
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 7.4e-184 647.5 433 71.1
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 2.2e-183 646.0 436 72.9
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.7e-183 645.2 434 72.4
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.7e-183 645.2 438 70.3
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.3e-183 644.4 434 71.9
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 8.2e-183 644.0 440 70.9
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 4.1e-182 641.7 437 71.9
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 5.3e-182 641.3 434 70.0
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.2e-181 640.2 439 69.7
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.5e-181 639.8 439 71.3
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 4.5e-181 638.3 441 71.0
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 2.9e-180 635.6 437 72.1
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.9e-179 632.9 445 70.3
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 2.5e-179 632.5 437 71.9
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 4.2e-179 631.7 437 70.5
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.5e-179 631.3 439 71.5
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.5e-179 631.3 440 69.8
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 2.7e-178 629.0 440 71.1
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 7.9e-178 627.5 436 70.0
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.9e-177 625.2 486 64.6
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 3.9e-177 625.2 438 70.1
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 7.4e-176 620.9 441 68.5
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 7.4e-176 620.9 435 68.0
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 4.8e-175 618.2 437 68.2
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 6.3e-175 617.8 435 66.7
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 6.3e-175 617.8 435 70.1
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.8e-174 616.3 459 65.4
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.5e-173 613.2 438 69.2
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 2.0e-173 612.8 389 75.8
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 4.5e-173 611.7 434 68.0
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 5.9e-173 611.3 441 69.2
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 5.0e-172 608.2 440 70.0
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 6.5e-172 607.8 438 67.4
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.1e-171 607.1 436 67.9
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.4e-171 606.7 478 65.7
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.9e-171 606.3 435 67.1
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 5.5e-171 604.7 434 66.8
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.7e-170 602.4 436 66.3
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.7e-170 601.7 476 65.3
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 6.1e-170 601.3 435 68.0
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.0e-170 600.9 459 67.1
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 2.3e-169 599.4 488 62.7
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 3.9e-169 598.6 437 66.6
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 6.7e-169 597.8 438 67.1
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.7e-167 593.2 479 60.5
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.8e-167 592.4 389 72.2
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.8e-167 591.7 446 65.7
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 8.2e-167 590.9 406 71.9
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.4e-166 590.1 446 65.5
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.4e-166 590.1 479 61.2
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 1.4e-166 590.1 478 61.3
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 5.3e-166 588.2 479 60.8
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 7.0e-166 587.8 434 64.3
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 2.0e-165 586.3 444 65.8
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.6e-165 585.9 438 65.5
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.0e-164 583.9 478 60.7
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.2e-164 582.8 437 65.2
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.8e-164 582.0 439 65.4
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.9e-163 579.7 441 63.0
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 3.2e-163 578.9 479 60.5
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 7.2e-163 577.8 436 65.1
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 3.0e-161 572.4 441 62.4
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 8.8e-161 570.9 389 71.5
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.5e-160 570.1 441 63.7
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.5e-160 570.1 392 70.7
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 2.6e-160 569.3 436 64.2
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.3e-159 567.0 441 64.6
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 6.3e-159 564.7 439 65.4
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 5.3e-158 561.6 439 64.2
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 9.1e-158 560.8 502 57.2
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 9.1e-158 560.8 434 62.9
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.2e-157 560.5 436 64.2
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 1.6e-157 560.1 434 63.4
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 8.5e-156 554.3 440 62.7
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.1e-155 553.9 434 62.7
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.5e-155 552.7 437 63.4
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 3.2e-155 552.4 437 63.4
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 5.5e-155 551.6 435 63.7
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 7.2e-155 551.2 438 61.4
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 9.4e-155 550.8 439 63.6
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.1e-154 549.7 438 62.3
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 4.7e-154 548.5 436 62.8
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 4.7e-154 548.5 438 62.1
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 6.1e-154 548.1 437 63.2
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 5.2e-153 545.0 434 62.7
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 9.8e-152 540.8 442 61.1
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.3e-151 540.4 437 62.2
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 8.3e-151 537.7 436 62.4
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 4.5e-149 531.9 445 61.8
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.7e-148 530.0 437 60.4
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 2.3e-148 529.6 437 60.4
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.1e-147 527.3 438 62.6
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 9.5e-147 524.2 438 60.3
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.1e-146 523.1 437 59.3
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.1e-146 523.1 437 59.3
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 4.7e-146 521.9 348 74.4
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 6.8e-145 518.1 434 59.4
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 3.4e-144 515.8 437 58.8
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 3.5e-141 505.8 397 63.0
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 4.5e-141 505.4 464 55.2
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 4.4e-136 488.8 458 54.6
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.7e-135 486.9 455 53.8
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.4e-129 467.2 435 56.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.5e-128 463.8 469 51.0
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 2.1e-125 453.4 250 84.0
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 3.9e-124 449.1 359 62.7
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 5.2e-121 438.7 358 60.1
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 5.6e-115 418.7 441 50.1
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 4.7e-114 415.6 241 79.3
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.7e-111 407.1 281 65.8
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 8.4e-111 404.8 246 74.0
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.7e-100 370.5 490 42.4
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 1.1e-99 367.9 261 64.8
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.5e-99 366.7 303 60.7
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 7.3e-99 365.2 245 66.5
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.4e-96 356.3 514 40.7
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 7.1e-94 348.6 304 54.9
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 5.6e-91 339.0 299 59.9
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 2.4e-89 333.6 493 39.6
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 1.2e-88 331.3 388 47.4
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.7e-87 327.4 260 58.1
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 2.1e-82 310.5 437 39.1
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.1e-69 265.8 429 39.9
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-65 253.8 189 66.7
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.1e-49 201.8 153 66.0
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 2.4e-49 200.7 193 57.5
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-43 181.0 164 55.5
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 5.9e-40 169.5 138 65.2
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.9e-39 167.2 100 79.0
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.1e-38 165.2 92 82.6
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.2e-38 163.3 92 81.5
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 2.1e-37 161.0 194 46.9
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.6e-37 160.2 92 79.3
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 4.7e-37 159.8 108 69.4
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.8e-34 150.6 144 53.5
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.8e-34 150.6 144 53.5
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.1e-33 148.7 178 45.5
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 8.6e-31 139.0 154 49.4
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 2.4e-25 120.9 134 48.5
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.2e-25 120.6 90 56.7
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 2.7e-24 117.5 187 41.2
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 3.7e-18 97.1 67 65.7
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 6.2e-13 79.7 45 77.8
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.5e-11 75.1 45 68.9
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.5e-11 75.1 45 68.9


User provided reference genes

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