Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 4.5e-125 451.4 255 100.0
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 2.4e-118 429.1 256 94.9
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.2e-117 426.8 255 92.2
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 5.9e-117 424.5 256 94.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 3.1e-102 375.6 253 81.4
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 5.3e-102 374.8 253 81.4
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 3.5e-101 372.1 254 79.1
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.3e-100 370.2 253 80.6
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.7e-100 369.8 253 79.8
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 8.5e-100 367.5 251 80.9
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.5e-100 367.5 250 80.4
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.9e-99 366.3 250 80.0
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 7.2e-99 364.4 253 79.1
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.2e-98 363.6 254 81.5
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 2.1e-98 362.8 252 78.6
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 2.7e-98 362.5 253 79.4
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 4.7e-98 361.7 253 79.1
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 6.1e-98 361.3 253 77.1
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.0e-97 360.5 253 79.4
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.0e-97 360.5 253 76.3
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.4e-97 360.1 257 77.8
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 3.9e-97 358.6 254 81.9
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.2e-97 358.2 255 80.4
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 8.8e-97 357.5 250 80.4
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.1e-96 357.1 251 78.1
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.6e-96 355.9 248 77.4
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 4.4e-96 355.1 254 79.5
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.3e-95 353.6 250 76.4
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.7e-95 353.2 253 76.7
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 3.1e-94 349.0 244 81.6
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 7.0e-94 347.8 253 74.3
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 9.1e-94 347.4 254 75.2
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 9.1e-94 347.4 245 80.0
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 9.1e-94 347.4 253 77.5
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.6e-93 346.7 253 75.1
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.0e-93 346.3 239 80.3
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 2.0e-93 346.3 255 79.2
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.5e-93 345.5 243 74.1
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.5e-93 345.5 255 78.8
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 7.7e-93 344.4 253 73.9
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 7.7e-93 344.4 253 79.4
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.0e-92 344.0 248 79.0
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 2.2e-92 342.8 252 74.2
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 5.0e-92 341.7 250 78.0
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 8.5e-92 340.9 254 75.2
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 1.1e-91 340.5 255 75.7
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.9e-91 339.7 254 76.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 5.5e-91 338.2 253 75.5
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 5.5e-91 338.2 250 77.6
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 7.2e-91 337.8 254 75.6
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 9.4e-91 337.4 250 75.6
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.1e-90 336.3 253 76.7
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.1e-90 336.3 244 78.3
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.7e-90 335.9 248 75.8
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.7e-90 335.9 263 71.9
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 4.7e-90 335.1 251 73.3
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 8.0e-90 334.3 252 77.4
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.4e-89 333.6 254 73.6
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.0e-89 332.4 253 74.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 8.8e-89 330.9 254 72.0
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 2.0e-88 329.7 251 72.9
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.6e-88 329.3 255 74.9
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 3.4e-88 328.9 254 75.6
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 3.4e-88 328.9 251 75.7
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 7.5e-88 327.8 249 72.7
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.3e-87 327.0 243 74.9
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 2.2e-87 326.2 251 72.1
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 2.2e-87 326.2 253 72.3
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.8e-87 325.9 251 72.1
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 6.3e-87 324.7 256 74.2
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.1e-86 323.9 246 76.4
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.4e-86 322.8 251 75.3
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 7.0e-86 321.2 246 75.6
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.0e-85 319.7 253 71.9
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 2.7e-85 319.3 270 69.6
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.2e-84 316.2 249 68.7
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 3.8e-84 315.5 215 72.6
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 6.5e-84 314.7 203 77.8
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.5e-83 313.5 247 70.9
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.5e-83 313.5 347 54.5
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 4.2e-83 312.0 250 71.2
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 7.2e-83 311.2 194 79.4
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.6e-82 310.1 248 71.4
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.1e-82 309.7 247 70.4
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 2.1e-82 309.7 239 73.2
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 1.0e-81 307.4 238 71.0
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.0e-81 307.4 229 71.2
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.3e-81 306.2 334 59.0
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 2.0e-80 303.1 248 69.0
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 2.6e-80 302.8 238 71.0
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 2.6e-80 302.8 249 68.7
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 2.6e-80 302.8 247 68.4
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 9.8e-80 300.8 237 71.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 9.8e-80 300.8 238 71.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 9.8e-80 300.8 248 67.3
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 9.8e-80 300.8 248 69.8
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.7e-79 300.1 245 69.8
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.1e-78 297.4 261 66.3
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.8e-78 296.6 247 69.6
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.7e-77 292.7 253 70.4
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 5.9e-77 291.6 244 68.4
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.3e-76 289.7 294 62.6
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.3e-76 289.7 253 69.6
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-75 287.3 253 65.2
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-75 287.0 246 67.1
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 3.3e-75 285.8 244 67.2
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 3.3e-75 285.8 274 64.2
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.7e-71 273.5 216 61.1
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.4e-70 270.4 177 77.4
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.0e-69 266.5 244 66.0
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.3e-68 263.1 287 55.4
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 5.0e-68 261.9 249 62.7
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.1e-67 260.8 248 59.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 4.3e-67 258.8 251 59.0
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.3e-63 247.3 252 57.9
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.4e-63 245.0 249 57.8
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 5.0e-60 235.3 223 58.3
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.6e-59 231.9 246 55.3
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 6.2e-58 228.4 248 57.7
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.8e-57 226.9 243 56.8
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 8.9e-57 224.6 148 76.4
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 2.4e-54 216.5 248 56.5
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 4.6e-53 212.2 223 50.2
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.1e-49 201.1 136 75.7
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.3e-49 199.9 126 77.0
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.4e-46 190.7 172 63.4
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 3.0e-44 183.0 145 64.1
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.6e-42 177.2 133 67.7
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 8.1e-42 174.9 146 73.3
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.2e-40 171.0 256 43.4
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.4e-38 162.2 340 42.6
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.7e-37 159.8 160 56.2
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.9e-35 153.7 192 58.3
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 6.2e-34 148.7 218 38.1
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.5e-32 144.1 239 38.9
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 6.4e-31 138.7 230 37.0
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.6e-29 134.0 118 75.4
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.0e-28 129.8 108 74.1
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 8.1e-26 121.7 71 85.9
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 3.4e-24 116.3 92 62.0
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.7e-23 114.0 60 86.7
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 6.7e-20 102.1 79 62.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-18 97.4 79 59.5
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.9e-15 85.9 77 71.4
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.1e-11 74.7 156 35.3
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.8e-10 69.3 184 30.4
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 5.0e-07 59.3 38 73.7
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.0e-07 59.3 34 70.6
AagrBONN_evm.TU.Sc2ySwM_362.486 Anthoceros agrestis HOM05D025310 ORTHO05D023473 5.5e-06 55.8 120 36.7


User provided reference genes

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