Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 1.8e-38 162.2 84 100.0
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 2.1e-23 112.1 88 79.5
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 2.3e-22 108.6 88 76.1
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 5.8e-21 104.0 90 73.3
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 2.6e-13 78.6 95 51.6
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 1.1e-11 73.2 95 49.5
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 6.0e-10 67.4 86 48.8
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.8e-10 67.0 85 48.2
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 7.8e-10 67.0 85 48.2
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.7e-09 65.9 85 47.1
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 2.3e-09 65.5 94 42.6
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.3e-09 65.5 95 49.5
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.1e-08 63.2 96 45.8
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.1e-08 63.2 88 46.6
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.5e-08 62.8 95 45.3
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.5e-08 62.8 94 39.4
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 1.9e-08 62.4 97 46.4
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.3e-08 60.5 85 47.1
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 9.6e-08 60.1 94 42.6
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 9.6e-08 60.1 100 47.0
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.2e-07 59.7 93 40.9
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 1.6e-07 59.3 95 44.2
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.8e-07 58.5 96 43.8
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.8e-07 58.5 90 47.8
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.6e-07 58.2 98 45.9
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.6e-07 58.2 98 45.9
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 3.6e-07 58.2 97 45.4
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 3.6e-07 58.2 93 41.9
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 4.7e-07 57.8 90 46.7
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 6.2e-07 57.4 64 54.7
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.1e-06 56.6 89 44.9
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.1e-06 56.6 89 44.9
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.1e-06 56.6 93 41.9
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.1e-06 56.6 89 43.8
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 1.4e-06 56.2 87 42.5
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 2.4e-06 55.5 85 44.7
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.1e-06 55.1 96 41.7
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.1e-06 55.1 85 41.2
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 4.0e-06 54.7 80 43.8
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 4.0e-06 54.7 95 42.1
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 6.9e-06 53.9 95 41.1
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 6.9e-06 53.9 92 35.9
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 9.0e-06 53.5 94 37.2


User provided reference genes

Program Settings