Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 1.3e-47 192.6 90 100.0
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.1e-28 128.3 93 68.8
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.2e-28 127.5 91 70.3
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 9.5e-22 106.7 94 61.7
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.2e-19 99.8 91 61.5
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 1.8e-12 75.9 88 46.6
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.9e-12 73.9 63 54.0
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.5e-11 72.8 86 45.3
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 3.4e-11 71.6 62 58.1
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 3.4e-11 71.6 79 49.4
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.8e-11 70.9 63 55.6
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 7.6e-11 70.5 87 44.8
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 9.9e-11 70.1 40 72.5
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 9.9e-11 70.1 40 72.5
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-10 69.7 80 47.5
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.3e-10 69.7 87 43.7
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.3e-10 69.7 79 46.8
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 1.3e-10 69.7 42 73.8
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.7e-10 69.3 69 47.8
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 2.2e-10 68.9 87 43.7
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 2.2e-10 68.9 87 43.7
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 2.2e-10 68.9 80 48.8
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 2.9e-10 68.6 40 72.5
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 2.9e-10 68.6 87 43.7
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 2.9e-10 68.6 89 40.4
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 3.8e-10 68.2 75 52.0
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 3.8e-10 68.2 75 52.0
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 3.8e-10 68.2 75 52.0
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 3.8e-10 68.2 79 49.4
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.8e-10 68.2 67 49.3
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 6.4e-10 67.4 41 73.2
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 6.4e-10 67.4 36 77.8
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.4e-10 67.4 67 49.3
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 6.4e-10 67.4 69 52.2
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 8.4e-10 67.0 55 58.2
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.9e-09 65.9 40 67.5
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.9e-09 65.9 67 47.8
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-09 65.9 35 80.0
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 1.9e-09 65.9 35 80.0
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.9e-09 65.9 69 49.3
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.9e-09 65.9 60 51.7
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 1.9e-09 65.9 59 54.2
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.4e-09 65.5 67 49.3
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 2.4e-09 65.5 35 77.1
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 3.2e-09 65.1 40 70.0
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.2e-09 64.7 35 80.0
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 5.4e-09 64.3 90 42.2
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 5.4e-09 64.3 35 77.1
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 7.1e-09 63.9 46 58.7
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 9.3e-09 63.5 34 79.4
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.2e-08 63.2 90 40.0
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 1.2e-08 63.2 36 72.2
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.6e-08 62.8 69 47.8
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.6e-08 62.8 74 44.6
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.6e-08 62.8 66 48.5
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.1e-08 62.4 55 56.4
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.7e-08 62.0 47 63.8
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.7e-08 62.0 47 63.8
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.7e-08 62.0 43 65.1
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.7e-08 62.0 43 65.1
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.7e-08 62.0 51 54.9
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 2.7e-08 62.0 40 70.0
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.7e-08 62.0 48 60.4
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 2.7e-08 62.0 90 41.1
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.5e-08 61.6 40 70.0
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.5e-08 61.6 40 70.0
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 3.5e-08 61.6 73 46.6
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.5e-08 61.6 41 61.0
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.5e-08 61.6 39 61.5
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 4.6e-08 61.2 42 61.9
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.6e-08 61.2 47 63.8
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.6e-08 61.2 66 45.5
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 6.0e-08 60.8 34 76.5
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 6.0e-08 60.8 35 68.6
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 7.8e-08 60.5 61 52.5
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.8e-08 60.5 36 72.2
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.8e-08 60.5 36 72.2
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.8e-08 60.5 36 72.2
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.8e-08 60.5 36 72.2
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 7.8e-08 60.5 38 60.5
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.8e-08 60.5 35 68.6
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 7.8e-08 60.5 35 68.6
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.0e-07 60.1 37 62.2
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.3e-07 59.7 42 59.5
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 1.3e-07 59.7 80 41.2
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.3e-07 59.7 43 62.8
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-07 59.7 51 51.0
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 1.3e-07 59.7 35 68.6
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 1.7e-07 59.3 48 60.4
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 2.3e-07 58.9 32 78.1
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.3e-07 58.9 31 83.9
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 2.3e-07 58.9 32 78.1
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 3.0e-07 58.5 33 69.7
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 3.0e-07 58.5 55 54.5
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.0e-07 58.5 67 41.8
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.0e-07 58.5 67 41.8
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 3.0e-07 58.5 81 45.7
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 3.9e-07 58.2 40 62.5
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 3.9e-07 58.2 32 78.1
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 3.9e-07 58.2 60 48.3
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 3.9e-07 58.2 33 69.7
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 3.9e-07 58.2 40 65.0
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 3.9e-07 58.2 33 72.7
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 5.1e-07 57.8 37 64.9
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.1e-07 57.8 57 50.9
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 5.1e-07 57.8 32 71.9
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 5.1e-07 57.8 41 65.9
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 6.6e-07 57.4 32 71.9
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 8.7e-07 57.0 32 75.0
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 8.7e-07 57.0 74 44.6
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.9e-06 55.8 32 71.9
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.9e-06 55.8 33 69.7
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.9e-06 55.8 31 67.7
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.5e-06 55.5 40 57.5
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 2.5e-06 55.5 31 74.2
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.5e-06 55.5 32 68.8
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 2.5e-06 55.5 30 83.3
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 2.5e-06 55.5 48 56.2
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 2.5e-06 55.5 30 83.3
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 2.5e-06 55.5 80 43.8
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.5e-06 55.5 30 76.7
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.3e-06 55.1 33 63.6
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 3.3e-06 55.1 66 45.5
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.3e-06 55.1 30 80.0
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.3e-06 55.1 84 40.5
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.3e-06 55.1 32 71.9
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 4.3e-06 54.7 31 74.2
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 4.3e-06 54.7 30 80.0
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.3e-06 54.7 30 80.0
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 4.3e-06 54.7 39 61.5
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 5.6e-06 54.3 34 64.7
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 5.6e-06 54.3 30 80.0
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 5.6e-06 54.3 52 44.2
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 5.6e-06 54.3 43 53.5
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 7.3e-06 53.9 30 80.0
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 9.6e-06 53.5 30 76.7
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.6e-06 53.5 37 59.5
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 9.6e-06 53.5 32 68.8


User provided reference genes

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