Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.1e-158 563.9 446 100.0
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 9.9e-112 407.9 471 77.3
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 3.0e-92 343.2 471 72.4
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 3.3e-91 339.7 448 71.4
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 8.0e-69 265.4 457 61.7
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 1.4e-65 254.6 458 59.8
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 3.5e-64 250.0 456 60.7
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 1.3e-63 248.1 471 53.3
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 2.5e-62 243.8 471 59.9
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.1e-61 240.7 433 55.7
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 3.6e-61 240.0 466 54.5
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 1.5e-59 234.6 463 54.9
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 2.6e-59 233.8 463 54.4
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 3.7e-58 229.9 463 54.4
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 4.8e-58 229.6 457 51.6
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 8.3e-58 228.8 468 52.4
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 1.3e-55 221.5 450 57.3
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 5.0e-55 219.5 445 45.6
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.5e-54 218.0 468 58.1
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 4.2e-54 216.5 446 61.4
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 9.4e-54 215.3 459 50.5
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 3.6e-53 213.4 448 58.7
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 4.7e-53 213.0 448 47.1
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 4.0e-52 209.9 456 59.6
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 4.0e-52 209.9 448 43.5
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 2.6e-51 207.2 450 57.6
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 1.4e-49 201.4 432 60.9
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 2.4e-49 200.7 453 58.7
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 4.1e-49 199.9 338 58.9
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 1.2e-48 198.4 349 56.2
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.6e-48 198.0 476 57.1
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 2.7e-48 197.2 460 53.0
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 7.7e-48 195.7 462 54.3
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 1.0e-47 195.3 465 58.3
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 1.7e-47 194.5 460 57.2
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 6.6e-47 192.6 471 52.0
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.9e-46 191.0 448 57.8
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 2.5e-46 190.7 462 53.7
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 4.2e-46 189.9 438 57.3
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 4.2e-46 189.9 462 57.1
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 5.5e-46 189.5 457 40.3
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 7.2e-46 189.1 463 57.7
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 7.2e-46 189.1 339 55.5
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 2.8e-45 187.2 449 45.7
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 2.8e-45 187.2 471 53.9
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 6.1e-45 186.0 344 66.9
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 8.0e-45 185.7 470 49.1
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 1.4e-44 184.9 462 55.2
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 1.8e-44 184.5 453 45.0
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 2.3e-44 184.1 454 54.8
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 1.2e-43 181.8 443 31.8
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 2.0e-43 181.0 463 56.8
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 3.4e-43 180.3 463 55.7
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 3.4e-43 180.3 435 57.9
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 5.7e-43 179.5 463 56.2
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 7.5e-43 179.1 463 56.4
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 2.2e-42 177.6 440 58.0
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 2.2e-42 177.6 470 50.2
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 2.9e-42 177.2 440 58.0
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 6.3e-42 176.0 462 55.4
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 6.3e-42 176.0 462 55.4
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 3.2e-41 173.7 440 57.5
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 1.5e-38 164.9 454 55.9
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 1.9e-38 164.5 444 55.4
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 4.3e-38 163.3 354 48.9
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 5.2e-36 156.4 410 60.5
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 8.9e-36 155.6 350 52.3
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 1.2e-35 155.2 454 55.5
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 1.7e-34 151.4 207 42.5
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 7.0e-33 146.0 347 33.1
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 8.6e-31 139.0 467 27.2
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 1.1e-30 138.7 344 51.7
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.5e-30 138.3 350 47.7
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 4.3e-30 136.7 338 48.2
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 1.5e-27 128.3 339 47.8
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 9.2e-25 119.0 184 40.8
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 1.1e-22 112.1 205 36.6
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 1.1e-22 112.1 172 40.1
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 8.1e-13 79.3 65 56.9
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 3.1e-12 77.4 64 57.8
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 1.2e-08 65.5 49 61.2


User provided reference genes

Program Settings