Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 1.1e-133 479.9 231 100.0
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 5.5e-130 467.6 230 97.8
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.7e-115 419.5 223 88.8
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 3.8e-115 418.3 223 88.3
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.6e-113 412.9 222 88.3
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 5.9e-108 394.4 221 84.2
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 7.7e-108 394.0 222 82.4
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 2.9e-107 392.1 225 81.8
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 3.8e-107 391.7 224 83.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 5.0e-107 391.3 222 82.9
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 8.5e-107 390.6 221 81.4
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 8.5e-107 390.6 223 82.1
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.1e-106 390.2 225 80.4
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.4e-106 389.8 223 81.6
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.9e-106 389.4 224 82.1
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 4.2e-106 388.3 224 79.9
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 4.2e-106 388.3 221 81.4
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 4.2e-106 388.3 225 79.6
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 5.5e-106 387.9 228 79.4
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 7.2e-106 387.5 222 80.6
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 9.4e-106 387.1 226 81.4
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.2e-105 386.7 222 79.3
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.2e-105 386.7 227 79.3
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 2.1e-105 386.0 225 80.4
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 2.1e-105 386.0 221 81.0
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.7e-105 385.6 222 80.2
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 3.6e-105 385.2 218 82.1
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 4.7e-105 384.8 226 80.5
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 4.7e-105 384.8 221 80.5
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 6.1e-105 384.4 222 80.6
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.1e-105 384.4 222 79.3
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.4e-104 383.3 224 79.9
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.4e-104 383.3 221 81.0
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 1.8e-104 382.9 221 80.1
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.8e-104 382.9 222 79.3
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.3e-104 382.5 221 79.6
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 2.3e-104 382.5 226 77.9
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.0e-104 382.1 225 80.0
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 3.0e-104 382.1 221 80.1
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.0e-104 382.1 222 79.7
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 3.0e-104 382.1 221 81.4
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 3.9e-104 381.7 221 79.6
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 3.9e-104 381.7 226 78.3
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 5.2e-104 381.3 226 79.6
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 5.2e-104 381.3 221 79.6
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 5.2e-104 381.3 221 80.5
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 8.8e-104 380.6 221 80.1
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 8.8e-104 380.6 221 79.6
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 8.8e-104 380.6 222 78.4
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.1e-103 380.2 220 80.0
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.1e-103 380.2 220 80.0
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.1e-103 380.2 220 80.0
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 1.1e-103 380.2 218 80.7
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.5e-103 379.8 221 80.1
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 2.0e-103 379.4 226 77.0
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.0e-103 379.4 223 80.3
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.6e-103 379.0 222 79.7
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 2.6e-103 379.0 221 79.6
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 2.6e-103 379.0 216 81.0
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.3e-103 378.6 218 81.2
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 4.4e-103 378.3 222 77.9
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 4.4e-103 378.3 221 78.7
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 4.4e-103 378.3 218 81.2
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.4e-103 378.3 224 79.5
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 5.7e-103 377.9 221 79.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 9.7e-103 377.1 221 78.7
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 9.7e-103 377.1 221 79.2
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.3e-102 376.7 221 78.7
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.3e-102 376.7 218 80.3
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.3e-102 376.7 222 78.8
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.3e-102 376.7 226 76.5
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 1.3e-102 376.7 226 76.5
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.7e-102 376.3 221 78.7
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.2e-102 375.9 221 79.2
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 2.8e-102 375.6 225 79.1
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 2.8e-102 375.6 217 81.6
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.8e-102 375.6 218 79.8
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 3.7e-102 375.2 221 79.2
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 4.8e-102 374.8 211 82.0
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 6.3e-102 374.4 221 79.2
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 8.2e-102 374.0 222 80.2
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 1.8e-101 372.9 218 78.9
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.8e-101 372.9 222 78.4
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 2.4e-101 372.5 221 78.7
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.4e-101 372.5 211 81.5
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 3.1e-101 372.1 222 78.4
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 4.1e-101 371.7 221 77.8
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 5.3e-101 371.3 221 78.3
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 5.3e-101 371.3 218 78.9
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 7.0e-101 370.9 221 77.8
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 7.0e-101 370.9 221 77.8
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 9.1e-101 370.5 221 78.7
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 9.1e-101 370.5 221 77.4
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 9.1e-101 370.5 218 79.8
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 9.1e-101 370.5 227 76.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.2e-100 370.2 216 80.1
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.2e-100 370.2 218 78.9
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.5e-100 368.6 227 75.3
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 4.5e-100 368.2 216 77.8
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 7.7e-100 367.5 234 75.6
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 1.0e-99 367.1 218 77.5
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.0e-99 367.1 221 76.5
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.7e-99 366.3 227 74.9
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.9e-99 365.5 221 76.0
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 3.8e-99 365.2 219 79.0
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 3.8e-99 365.2 222 77.0
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.1e-98 363.6 221 76.5
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.5e-98 363.2 221 76.0
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.9e-98 362.8 227 74.0
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 2.5e-98 362.5 248 70.2
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 3.2e-98 362.1 222 77.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 7.2e-98 360.9 249 69.1
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 4.4e-95 351.7 217 75.6
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.3e-94 350.1 276 63.0
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.3e-94 350.1 221 75.6
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.4e-93 346.7 223 69.1
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 7.0e-93 344.4 216 73.6
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 9.1e-93 344.0 205 78.5
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 8.8e-88 327.4 229 69.4
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 9.8e-87 323.9 221 66.1
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 2.0e-84 316.2 220 65.5
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 2.7e-84 315.8 222 65.8
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 5.9e-84 314.7 169 87.0
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 7.2e-82 307.8 222 64.0
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.2e-71 273.9 166 74.7
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.5e-71 273.5 160 81.2
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 4.9e-70 268.5 158 79.7
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.2e-69 265.8 153 77.8
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 5.4e-69 265.0 225 56.0
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 7.0e-61 238.0 131 79.4
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.2e-60 237.3 163 68.7
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 2.1e-60 236.5 218 53.2
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 6.4e-54 214.9 213 48.4
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 1.1e-53 214.2 209 51.7
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 4.1e-53 212.2 128 75.0
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.1e-48 197.6 111 82.0
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 4.0e-48 195.7 112 75.9
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 6.8e-48 194.9 145 71.7
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.4e-47 192.2 115 72.2
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.4e-40 170.6 130 57.7
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.4e-37 159.8 102 74.5
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 7.1e-37 158.3 86 79.1
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.3e-30 137.5 218 36.7
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 4.3e-26 122.5 93 69.9
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 4.8e-25 119.0 134 44.0
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.2e-23 114.4 66 77.3
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 2.0e-23 113.6 83 60.2
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 7.6e-23 111.7 75 69.3
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.2e-22 110.2 75 77.3
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 2.9e-22 109.8 61 80.3
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.2e-21 105.9 58 70.7
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.3e-17 94.4 64 70.3
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 6.2e-17 92.0 58 79.3
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.4e-16 90.9 54 74.1
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 9.0e-16 88.2 58 77.6
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 4.5e-15 85.9 61 72.1
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 4.5e-15 85.9 64 70.3
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 4.9e-14 82.4 100 45.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 8.4e-14 81.6 51 80.4
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.7e-12 76.6 125 40.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.1e-10 71.2 50 68.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.4e-08 63.5 39 69.2
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 1.3e-06 57.8 37 81.1


User provided reference genes

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