Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002806 Sechium edule HOM05D005678 ORTHO05D006894 2.0e-84 315.8 177 100.0
MELO3C011199.2 Cucumis melo HOM05D005678 ORTHO05D006894 1.7e-59 233.0 181 71.3
CsaV3_2G031490 Cucumis sativus L. HOM05D005678 ORTHO05D006894 5.1e-59 231.5 181 71.3
ClCG08G012760 Citrullus lanatus HOM05D005678 ORTHO05D006894 1.5e-58 229.9 185 70.3
Manes.03G002700 Manihot esculenta HOM05D005678 ORTHO05D006894 7.9e-36 154.5 176 52.3
vmacro00604 Vaccinium macrocarpon HOM05D005678 ORTHO05D006894 3.0e-35 152.5 152 56.6
QL12p024739 Quercus lobata HOM05D005678 ORTHO05D006894 1.3e-33 147.1 183 51.9
CiPaw.08G018100 Carya illinoinensis HOM05D005678 ORTHO05D006894 4.8e-33 145.2 180 51.7
Eucgr.C02102 Eucalyptus grandis HOM05D005678 ORTHO05D006894 3.1e-32 142.5 110 67.3
TAR383G0152 Trochodendron aralioides HOM05D005678 ORTHO05D006894 3.1e-32 142.5 177 50.8
THA.LOC104801628 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 5.3e-32 141.7 177 48.6
Dinv16205 Davidia involucrata HOM05D005678 ORTHO05D006894 6.9e-32 141.4 178 48.9
Sc09g0007970 Simmondsia chinensis HOM05D005678 ORTHO05D006894 6.9e-32 141.4 176 49.4
PGR142G1712 Punica granatum HOM05D005678 ORTHO05D006894 1.5e-31 140.2 197 47.2
Sc09g0007960 Simmondsia chinensis HOM05D005678 ORTHO05D006894 1.5e-31 140.2 85 77.6
SGA_v2.0_scaffold146G36252 Striga asiatica HOM05D005678 ORTHO05D006894 2.0e-31 139.8 176 47.2
CANSAT25G2809 Cannabis sativa HOM05D005678 ORTHO05D006894 2.6e-31 139.4 88 72.7
MD08G1134200 Malus domestica HOM05D005678 ORTHO05D006894 3.4e-31 139.0 86 75.6
Prupe.1G462000 Prunus persica HOM05D005678 ORTHO05D006894 5.8e-31 138.3 86 75.6
Gohir.D05G068200 Gossypium hirsutum HOM05D005678 ORTHO05D006894 7.6e-31 137.9 136 54.4
Duzib187G0563 Durio zibethinus HOM05D005678 ORTHO05D006894 9.9e-31 137.5 182 52.2
Gorai.009G069000 Gossypium raimondii HOM05D005678 ORTHO05D006894 9.9e-31 137.5 136 55.1
MD00G1173100 Malus domestica HOM05D005678 ORTHO05D006894 9.9e-31 137.5 104 66.3
Thecc.09G005500 Theobroma cacao HOM05D005678 ORTHO05D006894 1.7e-30 136.7 175 52.0
CiPaw.07G214300 Carya illinoinensis HOM05D005678 ORTHO05D006894 3.8e-30 135.6 158 50.0
Nitab4.5_0008905g0030 Nicotiana tabacum HOM05D005678 ORTHO05D006894 3.8e-30 135.6 177 48.6
BcaB06g27969 Brassica carinata HOM05D005678 ORTHO05D006894 6.4e-30 134.8 86 73.3
Ciclev10009502m.g Citrus clementina HOM05D005678 ORTHO05D006894 6.4e-30 134.8 207 50.2
AT2G24440 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 8.4e-30 134.4 84 75.0
CARHR117620 Cardamine hirsuta HOM05D005678 ORTHO05D006894 8.4e-30 134.4 86 69.8
Carub.0004s0379 Capsella rubella HOM05D005678 ORTHO05D006894 1.1e-29 134.0 84 73.8
Migut.A00794 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.1e-29 134.0 86 69.8
Sp7g29220 Schrenkiella parvula HOM05D005678 ORTHO05D006894 1.1e-29 134.0 183 45.9
Actinidia03578 Actinidia chinensis HOM05D005678 ORTHO05D006894 1.4e-29 133.7 178 47.8
AL4G14870 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 1.4e-29 133.7 84 73.8
Cpa.g.sc244.11 Carica papaya HOM05D005678 ORTHO05D006894 1.9e-29 133.3 180 47.8
Nitab4.5_0001356g0020 Nicotiana tabacum HOM05D005678 ORTHO05D006894 4.2e-29 132.1 177 46.3
BcaC09g51917 Brassica carinata HOM05D005678 ORTHO05D006894 5.4e-29 131.7 181 46.4
C01p07670 Brassica napus HOM05D005678 ORTHO05D006894 5.4e-29 131.7 181 46.4
BolC1t00747H Brassica oleracea HOM05D005678 ORTHO05D006894 5.4e-29 131.7 181 46.4
BcaC02g08455 Brassica carinata HOM05D005678 ORTHO05D006894 7.1e-29 131.3 86 69.8
C04p54050 Brassica napus HOM05D005678 ORTHO05D006894 7.1e-29 131.3 86 69.8
BolC4t26956H Brassica oleracea HOM05D005678 ORTHO05D006894 7.1e-29 131.3 86 69.8
arahy.Tifrunner.gnm1.ann1.V3TD4F Arachis hypogaea HOM05D005678 ORTHO05D006894 1.2e-28 130.6 174 48.9
arahy.Tifrunner.gnm1.ann1.XT6XQE Arachis hypogaea HOM05D005678 ORTHO05D006894 1.2e-28 130.6 174 48.9
A09p56300 Brassica napus HOM05D005678 ORTHO05D006894 1.2e-28 130.6 86 70.9
BraA09t41025Z Brassica rapa HOM05D005678 ORTHO05D006894 1.2e-28 130.6 86 70.9
A04p18760 Brassica napus HOM05D005678 ORTHO05D006894 2.7e-28 129.4 86 68.6
BolC8t51499H Brassica oleracea HOM05D005678 ORTHO05D006894 2.7e-28 129.4 86 69.8
BraA04t17485Z Brassica rapa HOM05D005678 ORTHO05D006894 2.7e-28 129.4 86 68.6
ECA246G1984 Erigeron canadensis HOM05D005678 ORTHO05D006894 2.7e-28 129.4 134 59.0
PSO063G6472 Papaver somniferum HOM05D005678 ORTHO05D006894 2.7e-28 129.4 175 46.3
C08p39250 Brassica napus HOM05D005678 ORTHO05D006894 3.5e-28 129.0 86 69.8
MBI16_g25208_MAGBIO Magnolia biondii HOM05D005678 ORTHO05D006894 3.5e-28 129.0 176 43.2
THA.LOC104803592 Tarenaya hassleriana HOM05D005678 ORTHO05D006894 3.5e-28 129.0 194 45.9
Glyma.17G201900 Glycine max HOM05D005678 ORTHO05D006894 4.6e-28 128.6 110 59.1
Gohir.A05G065600 Gossypium hirsutum HOM05D005678 ORTHO05D006894 4.6e-28 128.6 177 48.0
FAN15G3337 Fragaria x ananassa HOM05D005678 ORTHO05D006894 7.9e-28 127.9 178 47.2
PSO170G6167 Papaver somniferum HOM05D005678 ORTHO05D006894 7.9e-28 127.9 175 47.4
RcHm_v2.0_Chr6g0312181 Rosa chinensis HOM05D005678 ORTHO05D006894 7.9e-28 127.9 177 48.0
GSVIVG01035539001 Vitis vinifera HOM05D005678 ORTHO05D006894 7.9e-28 127.9 177 46.3
Lsat_1_v5_gn_3_22720 Lactuca sativa HOM05D005678 ORTHO05D006894 1.0e-27 127.5 176 48.3
Oeu009186.1 Olea europaea HOM05D005678 ORTHO05D006894 1.0e-27 127.5 86 67.4
AT4G31360 Arabidopsis thaliana HOM05D005678 ORTHO05D006894 1.3e-27 127.1 177 45.8
FvH4_2g30710 Fragaria vesca HOM05D005678 ORTHO05D006894 1.3e-27 127.1 181 48.6
FAN24G1799 Fragaria x ananassa HOM05D000178 ORTHO05D001582 1.3e-27 127.1 181 48.6
TWI34G1196 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 2.3e-27 126.3 182 48.4
Atru.chr7.2621 Acer truncatum HOM05D005678 ORTHO05D006894 3.0e-27 125.9 189 45.0
FAN27G1837 Fragaria x ananassa HOM05D005678 ORTHO05D006894 3.0e-27 125.9 178 50.0
HanXRQChr17g0536371 Helianthus annuus HOM05D005678 ORTHO05D006894 3.0e-27 125.9 178 44.9
MD15G1109600 Malus domestica HOM05D005678 ORTHO05D006894 3.0e-27 125.9 147 56.5
Sabra18G0010600 Salix brachista HOM05D005678 ORTHO05D006894 3.0e-27 125.9 90 64.4
AL7G20710 Arabidopsis lyrata HOM05D005678 ORTHO05D006894 3.9e-27 125.6 184 45.7
CAN.G859.10 Capsicum annuum HOM05D005678 ORTHO05D006894 3.9e-27 125.6 88 67.0
Cc08_g14330 Coffea canephora HOM05D005678 ORTHO05D006894 3.9e-27 125.6 180 49.4
Thhalv10000334m.g Eutrema salsugineum HOM05D005678 ORTHO05D006894 3.9e-27 125.6 84 69.0
Hma1.2p1_0102F.1_g049830 Hydrangea macrophylla HOM05D005678 ORTHO05D006894 5.1e-27 125.2 196 42.9
Lalb_Chr24g0402441 Lupinus albus HOM05D005678 ORTHO05D006894 5.1e-27 125.2 86 67.4
Duzib168G0107 Durio zibethinus HOM05D005678 ORTHO05D006894 6.7e-27 124.8 194 46.9
A01p06940 Brassica napus HOM05D005678 ORTHO05D006894 1.5e-26 123.6 183 45.9
BraA01t00642Z Brassica rapa HOM05D005678 ORTHO05D006894 1.5e-26 123.6 180 46.1
FAN20G0695 Fragaria x ananassa HOM05D005678 ORTHO05D006894 2.5e-26 122.9 178 49.4
A08p18690 Brassica napus HOM05D002168 ORTHO05D002277 3.3e-26 122.5 88 65.9
Carub.0007s0920 Capsella rubella HOM05D005678 ORTHO05D006894 3.3e-26 122.5 177 46.3
HanXRQChr06g0173291 Helianthus annuus HOM05D005678 ORTHO05D006894 3.3e-26 122.5 175 43.4
SalBow6G4551 Salvia bowleyana HOM05D005678 ORTHO05D006894 3.3e-26 122.5 175 44.0
Aa31LG7G11430 Aethionema arabicum HOM05D005678 ORTHO05D006894 5.6e-26 121.7 94 63.8
Glyma.14G133100 Glycine max HOM05D005678 ORTHO05D006894 5.6e-26 121.7 111 57.7
Lj5g0006596 Lotus japonicus HOM05D005678 ORTHO05D006894 5.6e-26 121.7 177 47.5
Aa31LG2G19000 Aethionema arabicum HOM05D005678 ORTHO05D006894 7.4e-26 121.3 178 43.8
SHI21122 Sapria himalayana HOM05D005678 ORTHO05D006894 1.3e-25 120.6 90 61.1
Sp4g03460 Schrenkiella parvula HOM05D005678 ORTHO05D006894 1.3e-25 120.6 83 65.1
PGSC0003DMG400003060 Solanum tuberosum HOM05D005678 ORTHO05D006894 1.6e-25 120.2 88 63.6
TPR.G12081 Trifolium pratense HOM05D005678 ORTHO05D006894 1.6e-25 120.2 191 42.9
Phvul.001G058200 Phaseolus vulgaris HOM05D005678 ORTHO05D006894 2.1e-25 119.8 85 63.5
Sopen08g029020 Solanum pennellii HOM05D005678 ORTHO05D006894 2.8e-25 119.4 179 44.7
BolC3t21115H Brassica oleracea HOM05D005678 ORTHO05D006894 3.7e-25 119.0 111 56.8
Psat6g032200 Pisum sativum HOM05D005678 ORTHO05D006894 3.7e-25 119.0 178 45.5
Potri.018G004901 Populus trichocarpa HOM05D005678 ORTHO05D006894 8.1e-25 117.9 206 43.2
MSTRG.1882 Avicennia marina HOM05D005678 ORTHO05D006894 4.0e-24 115.5 175 39.4
Aqoxy7G03048 Aquilegia oxysepala HOM05D005678 ORTHO05D006894 1.2e-23 114.0 91 57.1
BcaC07g40931 Brassica carinata HOM05D005678 ORTHO05D006894 1.5e-23 113.6 78 69.2
Os11g0704000 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 7.6e-23 111.3 85 58.8
Pp3c6_27420 Physcomitrium patens HOM05D005678 ORTHO05D006894 2.9e-22 109.4 113 49.6
VMungo0647G1216 Vigna mungo HOM05D005678 ORTHO05D006894 2.9e-22 109.4 174 46.0
Pp3c5_240 Physcomitrium patens HOM05D005678 ORTHO05D006894 6.5e-22 108.2 121 47.1
Sabra06G0213900 Salix brachista HOM05D005678 ORTHO05D006894 6.5e-22 108.2 200 41.5
SEGI_38696 Sequoiadendron giganteum HOM05D005678 ORTHO05D006894 8.4e-22 107.8 113 45.1
Os05g0250500 Oryza sativa ssp. japonica HOM05D005678 ORTHO05D006894 1.4e-21 107.1 111 49.5
TWI63G1651 Tripterygium wilfordii HOM05D005678 ORTHO05D006894 1.4e-21 107.1 179 39.7
COL.COLO4_19050 Corchorus olitorius HOM05D005678 ORTHO05D006894 3.2e-21 105.9 189 44.4
Zm00001eb409020 Zea mays HOM05D005678 ORTHO05D006894 7.1e-21 104.8 101 52.5
Sabra18G0000200 Salix brachista HOM05D005678 ORTHO05D006894 9.3e-21 104.4 135 43.0
Ca_12878_v3 Cicer arietinum L. HOM05D005678 ORTHO05D006894 2.1e-20 103.2 177 42.4
CARHR239240 Cardamine hirsuta HOM05D005678 ORTHO05D006894 3.0e-19 99.4 71 67.6
Hund19398 Selenicereus undatus HOM05D005678 ORTHO05D006894 6.7e-19 98.2 89 52.8
SGA_v2.0_scaffold144G35960 Striga asiatica HOM05D000250 ORTHO05D002850 1.1e-18 97.4 92 45.7
BcaC01g01095 Brassica carinata HOM05D005678 ORTHO05D006894 5.7e-18 95.1 67 68.7
HPP92_015389 Vanilla planifolia HOM05D005678 ORTHO05D006894 7.4e-18 94.7 131 38.9
HPP92_027003 Vanilla planifolia HOM05D005678 ORTHO05D006894 9.6e-18 94.4 184 35.9
Migut.E01115 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.3e-17 94.0 86 51.2
Haze_21702 Corylus avellana HOM05D005678 ORTHO05D006894 6.2e-17 91.7 54 75.9
Mapoly0188s0010 Marchantia polymorpha HOM05D005678 ORTHO05D006894 8.2e-17 91.3 87 44.8
MELO3C016433.2 Cucumis melo HOM05D005678 ORTHO05D006894 9.0e-16 87.8 105 49.5
Rhsim09G0030000 Rhododendron simsii HOM05D005678 ORTHO05D006894 3.4e-15 85.9 187 36.9
Peaxi162Scf00102g01516 Petunia axillaris HOM05D005678 ORTHO05D006894 3.8e-14 82.4 143 41.3
Cre02.g120301 Chlamydomonas reinhardtii HOM05D005678 ORTHO05D006894 3.2e-13 79.3 69 46.4
Migut.E01114 Erythranthe guttata HOM05D005678 ORTHO05D006894 1.2e-12 77.4 84 44.0
HanXRQChr04g0118101 Helianthus annuus HOM05D005678 ORTHO05D006894 6.1e-12 75.1 73 47.9
CDE07G1371 Ceratophyllum demersum HOM05D005678 ORTHO05D006894 4.3e-10 68.9 134 37.3
C03p88040 Brassica napus HOM05D005678 ORTHO05D006894 2.8e-09 66.2 71 47.9
Haze_21709 Corylus avellana HOM05D005678 ORTHO05D006894 4.8e-09 65.5 314 28.3
Lsat_1_v5_gn_3_22700 Lactuca sativa HOM05D005678 ORTHO05D006894 2.2e-06 56.6 152 38.2
Haze_20337 Corylus avellana HOM05D005678 ORTHO05D006894 6.5e-06 55.1 34 70.6


User provided reference genes

Program Settings