Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 0.0e+00 2398.6 1199 100.0
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 0.0e+00 1379.8 1218 63.8
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 0.0e+00 1303.5 1220 60.7
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 0.0e+00 1281.5 1225 60.8
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 5.2e-107 393.7 1320 30.6
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 3.7e-105 387.5 1293 30.9
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.2e-103 382.5 1312 29.7
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 7.3e-101 373.2 1354 29.7
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 6.0e-87 327.0 1304 28.5
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 6.0e-87 327.0 1297 28.6
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 7.8e-87 326.6 1293 27.5
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 1.4e-83 315.8 1284 28.3
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 8.4e-81 306.6 1248 28.2
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 7.1e-80 303.5 1293 27.5
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 4.6e-79 300.8 1304 27.5
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.7e-78 298.9 1268 28.0
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.1e-77 296.2 1284 27.5
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.6e-76 292.4 1243 28.5
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.6e-76 291.2 1334 27.1
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 3.6e-76 291.2 1310 28.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 6.2e-76 290.4 1265 27.7
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.0e-75 287.7 1297 27.4
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 9.0e-75 286.6 1297 27.4
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.0e-75 286.6 1287 27.4
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 3.4e-74 284.6 1307 27.7
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.5e-74 284.3 1297 27.1
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.3e-73 282.7 1314 27.2
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.8e-73 281.2 1270 27.0
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 5.4e-72 277.3 1294 27.1
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.1e-71 275.4 1301 27.0
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 1.0e-70 273.1 1273 28.3
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 5.1e-70 270.8 1269 28.4
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 2.1e-68 265.4 1288 27.3
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 4.8e-68 264.2 1318 28.0
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 3.4e-66 258.1 1026 27.7
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 3.4e-66 258.1 1300 27.1
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 2.9e-65 255.0 1234 27.2
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 3.9e-62 244.6 1337 26.9
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 6.7e-62 243.8 1082 28.2
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 3.3e-61 241.5 1344 25.9
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 3.4e-58 231.5 1232 27.4
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 2.5e-56 225.3 1248 26.4
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 2.5e-56 225.3 1015 25.8
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 4.6e-55 221.1 1278 26.5
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 8.7e-54 216.9 1251 26.2
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 8.7e-54 216.9 1242 25.7
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.6e-52 212.6 1239 25.3
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 2.1e-52 212.2 1275 25.7
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 2.6e-50 205.3 1278 26.3
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.1e-48 199.9 1211 26.5
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.4e-48 199.5 1233 26.1
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 2.7e-47 195.3 1294 25.2
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 2.3e-46 192.2 1268 25.9
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 5.7e-45 187.6 1265 25.5
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.2e-44 185.7 1347 24.9
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.9e-42 177.6 1440 23.3
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 1.0e-41 176.8 1107 26.7
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 1.4e-40 172.9 1242 24.3
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 1.9e-40 172.6 1203 23.1
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 2.5e-40 172.2 1245 24.6
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.4e-38 166.4 556 30.0
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 6.3e-36 157.5 828 28.3
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.8e-35 156.0 1206 24.0
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 6.9e-35 154.1 1316 24.0
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.0e-34 152.5 1305 23.4
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 3.8e-33 148.3 1265 24.9
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 6.1e-31 141.0 1224 24.5
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 2.6e-29 135.6 1214 25.1
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 3.3e-29 135.2 1279 23.6
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.8e-28 131.3 1197 23.4
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.4e-27 129.8 1184 23.2
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 5.3e-27 127.9 691 27.8
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.2e-26 126.7 1302 22.0
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 5.9e-26 124.4 1192 23.2
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 5.9e-26 124.4 1191 23.3
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.8e-25 121.7 1307 22.2
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 5.0e-25 121.3 1326 22.7
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 5.5e-24 117.9 1278 23.0
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.0e-22 113.6 1341 22.8
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 8.8e-22 110.5 1297 22.6
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 3.3e-21 108.6 342 31.0
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 5.7e-21 107.8 1200 22.6
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 9.7e-21 107.1 1231 23.0
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 2.8e-20 105.5 1215 23.5
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.3e-20 104.4 1254 21.9
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.8e-19 102.8 1289 22.6
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 2.4e-19 102.4 1287 22.5
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 4.1e-19 101.7 1306 22.8
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 3.5e-18 98.6 772 24.5
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 3.5e-18 98.6 514 27.2
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.9e-18 97.8 288 30.6
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.3e-17 96.7 331 28.1
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.2e-17 95.9 288 30.2
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.2e-17 95.9 288 30.2
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.9e-17 95.5 1271 22.0
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 9.4e-16 90.5 1182 23.7
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 9.4e-16 90.5 263 30.4
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 2.1e-15 89.4 1265 23.6
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 8.0e-15 87.4 614 26.2
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.0e-14 87.0 1018 22.8
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 2.3e-14 85.9 567 24.5
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 5.2e-14 84.7 1160 22.4
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 6.8e-14 84.3 1279 21.1
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.6e-13 82.4 1187 22.3
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 2.6e-13 82.4 1221 21.5
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 3.4e-13 82.0 1187 22.3
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 4.4e-13 81.6 1187 22.2
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 7.5e-13 80.9 504 24.6
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 3.7e-12 78.6 1170 22.0
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 8.3e-12 77.4 1171 22.0
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-11 76.6 1186 21.9
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 1.4e-11 76.6 1186 21.9
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.4e-11 76.6 565 23.9
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 2.4e-11 75.9 1071 23.6
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 5.4e-11 74.7 564 24.6
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 1.6e-10 73.2 271 30.3
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 4.5e-10 71.6 564 24.3
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 7.7e-10 70.9 498 25.5
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 2.3e-09 69.3 1173 21.8
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 2.3e-09 69.3 1313 20.9
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 6.5e-09 67.8 548 23.0
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-08 67.0 498 25.1
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 3.2e-08 65.5 91 42.9
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 4.2e-08 65.1 1274 20.6
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 4.2e-08 65.1 1227 21.5
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.6e-07 62.0 1066 22.1
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 8.0e-07 60.8 565 24.6
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.0e-06 60.5 747 22.1
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 1.4e-06 60.1 356 24.4
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 1.8e-06 59.7 99 38.4
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 2.3e-06 59.3 321 28.3
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.3e-06 59.3 420 23.3
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 3.0e-06 58.9 93 39.8
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 4.0e-06 58.5 233 29.2
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 4.0e-06 58.5 453 24.5
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 5.2e-06 58.2 377 26.3
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 6.8e-06 57.8 91 44.0
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 8.8e-06 57.4 350 25.1


User provided reference genes

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