Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 2.0e-308 1061.6 552 100.0
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 3.3e-266 921.4 554 87.0
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 8.4e-262 906.7 554 84.5
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 4.1e-256 887.9 554 84.1
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 1.1e-240 836.6 579 77.0
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 3.9e-190 668.7 547 65.4
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 3.6e-188 662.1 546 64.7
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 5.8e-178 628.2 686 53.5
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.4e-176 623.6 554 60.5
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 3.5e-175 619.0 555 60.9
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 2.0e-170 603.2 559 59.4
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.3e-169 600.5 557 59.2
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 1.4e-168 597.0 544 59.7
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 2.1e-167 593.2 549 59.4
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 2.7e-167 592.8 555 59.5
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.0e-166 590.9 552 59.6
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 3.3e-165 585.9 556 56.7
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 2.8e-164 582.8 544 58.3
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.5e-162 577.0 557 56.4
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 5.8e-162 575.1 554 57.4
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 1.1e-160 570.9 555 57.3
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 2.4e-160 569.7 546 55.7
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 4.2e-160 568.9 541 57.1
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 4.2e-160 568.9 552 55.8
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.1e-159 566.6 541 56.7
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.6e-159 565.5 542 56.5
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 7.9e-159 564.7 541 56.7
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.3e-158 563.9 540 56.7
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.1e-157 560.8 542 56.5
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.3e-157 559.3 541 56.2
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 3.3e-157 559.3 547 55.9
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 4.3e-157 558.9 557 56.6
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 6.2e-156 555.1 542 56.3
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 8.1e-156 554.7 543 56.4
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.9e-152 543.5 556 54.7
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 3.2e-152 542.7 547 56.3
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 7.1e-152 541.6 554 53.8
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 1.2e-151 540.8 551 53.7
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 7.9e-151 538.1 555 53.2
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.3e-150 536.6 553 54.4
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.1e-149 534.3 540 55.0
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 5.6e-149 531.9 543 55.4
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 2.8e-148 529.6 553 54.2
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 4.8e-148 528.9 555 55.0
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 4.8e-148 528.9 553 54.2
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 6.9e-147 525.0 551 53.7
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.2e-146 524.2 551 53.5
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.0e-145 521.2 542 55.0
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.7e-145 520.4 542 54.8
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 6.5e-145 518.5 549 53.0
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.1e-144 517.7 551 51.7
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 9.3e-144 514.6 464 58.2
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 2.1e-143 513.5 549 52.6
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 6.0e-143 511.9 542 54.2
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 3.9e-142 509.2 519 56.8
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.1e-141 507.7 542 53.1
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 3.3e-141 506.1 550 52.9
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 9.6e-141 504.6 558 52.0
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 4.8e-140 502.3 545 51.7
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 6.3e-140 501.9 542 53.7
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 5.3e-139 498.8 560 51.4
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.2e-138 497.7 543 50.8
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 1.5e-138 497.3 543 51.0
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 3.8e-137 492.7 543 50.6
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 3.8e-137 492.7 545 50.5
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 8.5e-137 491.5 548 51.1
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 4.2e-136 489.2 541 51.0
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.6e-135 487.3 556 50.2
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 3.6e-135 486.1 384 63.5
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 4.6e-135 485.7 554 49.8
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.0e-134 484.6 542 51.3
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.3e-134 484.2 541 49.9
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.3e-134 484.2 542 51.3
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.8e-134 483.8 542 51.1
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 2.3e-134 483.4 541 50.8
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 3.9e-134 482.6 533 52.0
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 5.1e-134 482.3 541 50.6
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 8.7e-134 481.5 549 50.3
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.5e-133 479.9 438 59.4
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.8e-132 476.5 547 49.9
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 3.7e-132 476.1 543 49.7
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.2e-130 471.1 543 48.6
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 5.9e-130 468.8 550 49.8
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.7e-129 467.2 478 53.6
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 5.0e-129 465.7 591 47.2
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 7.2e-128 461.8 545 48.6
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.4e-126 457.6 552 49.5
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 1.8e-123 447.2 553 48.1
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 5.3e-123 445.7 484 51.4
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 2.2e-121 440.3 555 48.5
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 7.9e-119 431.8 350 61.7
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 5.2e-118 429.1 542 47.8
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.2e-113 413.7 464 51.3
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 4.7e-111 406.0 548 47.3
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 9.1e-107 391.7 548 43.1
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 3.5e-106 389.8 394 56.9
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 8.3e-100 368.6 323 58.8
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.6e-93 347.1 559 40.8
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.5e-88 331.3 351 53.6
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.4e-85 319.7 387 49.9
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 2.4e-83 313.9 573 37.0
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.6e-82 311.2 558 37.1
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.6e-79 301.2 429 41.5
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 5.2e-78 296.2 281 58.4
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 1.7e-76 291.2 570 35.3
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.7e-73 281.2 271 59.8
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 8.6e-73 278.9 323 51.1
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.8e-70 271.2 217 62.7
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 6.8e-70 269.2 277 53.4
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.5e-69 268.1 395 42.5
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 4.1e-67 260.0 430 40.9
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 3.4e-61 240.4 262 50.0
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 2.9e-60 237.3 430 35.1
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 2.1e-58 231.1 277 48.4
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 2.5e-56 224.2 411 37.5
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.2e-55 221.9 262 50.8
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.1e-54 217.2 165 64.8
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 6.6e-49 199.5 359 39.3
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.8e-47 194.1 158 60.8
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.3e-44 185.3 196 52.0
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 5.4e-43 179.9 155 58.7
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.5e-37 161.8 160 52.5
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 2.4e-35 154.5 117 65.0
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.6e-34 151.8 123 63.4
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.1e-32 145.6 150 54.7
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.5e-32 145.2 192 44.8
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.4e-30 137.9 245 42.0
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.0e-30 137.1 243 40.7
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.5e-29 135.2 263 39.2
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 2.7e-18 97.8 102 52.9
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 2.2e-15 88.2 107 47.7
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 6.5e-12 76.6 195 34.9
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 4.2e-11 73.9 90 47.8
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 4.2e-11 73.9 90 47.8
Cre03.g197550 Chlamydomonas reinhardtii HOM05D005606 ORTHO05D006446 1.3e-07 62.4 413 23.0
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 9.1e-06 56.2 93 38.7


User provided reference genes

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