Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002745 Sechium edule HOM05D002165 ORTHO05D001531 2.4e-40 168.3 82 100.0
Sed0018337 Sechium edule HOM05D002165 ORTHO05D001531 2.3e-38 161.8 82 95.1
ClCG02G014640 Citrullus lanatus HOM05D002165 ORTHO05D001531 5.6e-29 130.6 84 77.4
MELO3C004151.2 Cucumis melo HOM05D002165 ORTHO05D001531 9.6e-29 129.8 84 79.8
Sed0010612 Sechium edule HOM05D008018 ORTHO05D001531 1.1e-21 106.3 75 68.0
Sed0022046 Sechium edule HOM05D002165 ORTHO05D001531 1.9e-13 79.0 79 50.6
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 3.7e-12 74.7 68 61.8
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 6.2e-12 73.9 73 50.7
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 8.2e-12 73.6 82 48.8
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.8e-11 72.4 82 47.6
Sed0005500 Sechium edule HOM05D002165 ORTHO05D001531 2.4e-11 72.0 74 51.4
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 3.1e-11 71.6 76 56.6
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 3.1e-11 71.6 76 56.6
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 4.0e-11 71.2 76 56.6
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 5.3e-11 70.9 79 48.1
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 5.3e-11 70.9 79 48.1
Sed0013340 Sechium edule HOM05D002165 ORTHO05D001531 5.3e-11 70.9 78 47.4
MELO3C025020.2 Cucumis melo HOM05D002165 ORTHO05D001531 9.0e-11 70.1 86 48.8
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.2e-10 69.7 84 50.0
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.2e-10 69.7 84 50.0
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.2e-10 69.7 84 50.0
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.2e-10 69.7 84 51.2
CsaV3_6G002640 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.6e-10 68.6 85 49.4
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.6e-10 68.6 82 51.2
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 2.6e-10 68.6 76 55.3
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.6e-10 68.6 76 55.3
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 3.4e-10 68.2 76 51.3
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 3.4e-10 68.2 84 48.8
MELO3C015240.2 Cucumis melo HOM05D002165 ORTHO05D001531 5.8e-10 67.4 88 44.3
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 1.0e-09 66.6 75 53.3
Sed0027158 Sechium edule HOM05D002165 ORTHO05D001531 2.2e-09 65.5 86 48.8
MELO3C025018.2 Cucumis melo HOM05D002165 ORTHO05D001531 2.9e-09 65.1 84 45.2
Lsat_1_v5_gn_9_85080 Lactuca sativa HOM05D002165 ORTHO05D001531 3.8e-09 64.7 73 54.8
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 5.0e-09 64.3 82 46.3
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 5.0e-09 64.3 82 43.9
Phvul.007G205300 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 5.0e-09 64.3 68 51.5
Phvul.007G205400 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 5.0e-09 64.3 68 52.9
Phvul.007G205600 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 5.0e-09 64.3 68 52.9
ClCG03G017890 Citrullus lanatus HOM05D002165 ORTHO05D001531 8.4e-09 63.5 90 45.6
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 8.4e-09 63.5 71 52.1
CsaV3_1G038050 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.1e-08 63.2 79 44.3
Glyma.10G143200 Glycine max HOM05D008018 ORTHO05D001531 1.1e-08 63.2 68 52.9
Sed0016802 Sechium edule HOM05D002165 ORTHO05D001531 1.1e-08 63.2 89 46.1
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 1.4e-08 62.8 71 52.1
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 1.4e-08 62.8 72 51.4
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 1.9e-08 62.4 59 57.6
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 1.9e-08 62.4 59 57.6
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 1.9e-08 62.4 59 57.6
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 1.9e-08 62.4 59 57.6
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 1.9e-08 62.4 59 57.6
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 1.9e-08 62.4 59 57.6
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 1.9e-08 62.4 61 55.7
Glyma.10G143000 Glycine max HOM05D008018 ORTHO05D001531 1.9e-08 62.4 72 48.6
Glyma.10G143100 Glycine max HOM05D008018 ORTHO05D001531 1.9e-08 62.4 72 50.0
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.5e-08 62.0 82 47.6
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 2.5e-08 62.0 81 45.7
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 3.2e-08 61.6 61 55.7
Oeu000103.1 Olea europaea HOM05D008018 ORTHO05D001531 3.2e-08 61.6 70 50.0
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 3.2e-08 61.6 72 50.0
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 4.2e-08 61.2 62 51.6
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 4.2e-08 61.2 81 44.4
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 4.2e-08 61.2 81 44.4
Lalb_Chr21g0310041 Lupinus albus HOM05D008018 ORTHO05D001531 4.2e-08 61.2 71 43.7
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 5.5e-08 60.8 61 54.1
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 5.5e-08 60.8 70 52.9
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 5.5e-08 60.8 76 48.7
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 7.1e-08 60.5 76 48.7
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 9.3e-08 60.1 59 55.9
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 9.3e-08 60.1 59 55.9
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 9.3e-08 60.1 59 55.9
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 9.3e-08 60.1 59 55.9
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 9.3e-08 60.1 59 55.9
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 9.3e-08 60.1 59 55.9
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 9.3e-08 60.1 59 55.9
CSS0004014 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 9.3e-08 60.1 73 49.3
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 9.3e-08 60.1 60 56.7
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 9.3e-08 60.1 79 44.3
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 1.2e-07 59.7 78 44.9
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 1.2e-07 59.7 72 52.8
VMungo0720G1916 Vigna mungo HOM05D008018 ORTHO05D001531 1.2e-07 59.7 59 49.2
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 1.6e-07 59.3 70 50.0
arahy.Tifrunner.gnm1.ann1.1WI4WZ Arachis hypogaea HOM05D008018 ORTHO05D001531 1.6e-07 59.3 78 44.9
Glyma.20G091600 Glycine max HOM05D008018 ORTHO05D001531 1.6e-07 59.3 75 45.3
Glyma.20G091800 Glycine max HOM05D008018 ORTHO05D001531 1.6e-07 59.3 75 45.3
Nn3g21955 Nelumbo nucifera HOM05D002165 ORTHO05D001531 1.6e-07 59.3 61 50.8
Thecc.04G314700 Theobroma cacao HOM05D002165 ORTHO05D001531 1.6e-07 59.3 83 43.4
CsaV3_6G002620 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.1e-07 58.9 53 56.6
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.1e-07 58.9 80 47.5
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.1e-07 58.9 80 47.5
CsaV3_6G002650 Cucumis sativus L. HOM05D002165 ORTHO05D001531 2.7e-07 58.5 53 54.7
Glyma.20G091700 Glycine max HOM05D008018 ORTHO05D001531 2.7e-07 58.5 72 45.8
Prupe.4G278700 Prunus persica HOM05D002165 ORTHO05D001531 2.7e-07 58.5 80 42.5
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 3.5e-07 58.2 82 41.5
TPR.G2624 Trifolium pratense HOM05D008018 ORTHO05D001531 3.5e-07 58.2 72 44.4
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 4.6e-07 57.8 59 52.5
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 4.6e-07 57.8 58 53.4
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 4.6e-07 57.8 58 53.4
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 4.6e-07 57.8 58 53.4
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 4.6e-07 57.8 58 53.4
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 4.6e-07 57.8 58 53.4
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 4.6e-07 57.8 73 53.4
ClCG08G002330 Citrullus lanatus HOM05D002165 ORTHO05D001531 4.6e-07 57.8 53 56.6
ClCG08G002340 Citrullus lanatus HOM05D002165 ORTHO05D001531 4.6e-07 57.8 53 56.6
ClCG08G002370 Citrullus lanatus HOM05D002165 ORTHO05D001531 4.6e-07 57.8 53 56.6
MELO3C025021.2 Cucumis melo HOM05D002165 ORTHO05D001531 4.6e-07 57.8 40 65.0
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.6e-07 57.8 80 50.0
Lalb_Chr02g0147531 Lupinus albus HOM05D008018 ORTHO05D001531 4.6e-07 57.8 72 44.4
QL03p011025 Quercus lobata HOM05D016210 ORTHO05D001531 4.6e-07 57.8 73 47.9
Rhsim11G0104900 Rhododendron simsii HOM05D002165 ORTHO05D001531 4.6e-07 57.8 87 44.8
Ca_10206_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 6.1e-07 57.4 79 41.8
ClCG08G002300 Citrullus lanatus HOM05D002165 ORTHO05D001531 6.1e-07 57.4 44 61.4
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.1e-07 57.4 80 46.2
TPR.G18867 Trifolium pratense HOM05D008018 ORTHO05D001531 6.1e-07 57.4 71 43.7
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 7.9e-07 57.0 70 50.0
ClCG08G002280 Citrullus lanatus HOM05D002165 ORTHO05D001531 7.9e-07 57.0 40 65.0
Migut.B00883 Erythranthe guttata HOM05D002165 ORTHO05D001531 7.9e-07 57.0 70 51.4
Eucgr.H01322 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.9e-07 57.0 77 42.9
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.9e-07 57.0 80 46.2
Eucgr.L03553 Eucalyptus grandis HOM05D002165 ORTHO05D001531 7.9e-07 57.0 77 42.9
Gohir.A02G059800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 7.9e-07 57.0 83 42.2
Gohir.D02G065400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 7.9e-07 57.0 83 42.2
Gorai.005G074100 Gossypium raimondii HOM05D002165 ORTHO05D001531 7.9e-07 57.0 83 42.2
Lalb_Chr02g0147521 Lupinus albus HOM05D008018 ORTHO05D001531 7.9e-07 57.0 57 50.9
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 1.0e-06 56.6 75 44.0
Medtr1g084840 Medicago truncatula HOM05D008018 ORTHO05D001531 1.0e-06 56.6 72 45.8
Medtr1g484990 Medicago truncatula HOM05D008018 ORTHO05D001531 1.0e-06 56.6 72 45.8
Psat6g154080 Pisum sativum HOM05D008018 ORTHO05D001531 1.0e-06 56.6 71 42.3
Psat6g154200 Pisum sativum HOM05D008018 ORTHO05D001531 1.0e-06 56.6 71 42.3
Psat6g157040 Pisum sativum HOM05D008018 ORTHO05D001531 1.0e-06 56.6 71 43.7
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 1.3e-06 56.2 67 55.2
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 1.3e-06 56.2 67 55.2
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 1.3e-06 56.2 67 55.2
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.3e-06 56.2 80 45.0
Lsat_1_v5_gn_7_63620 Lactuca sativa HOM05D002165 ORTHO05D001531 1.3e-06 56.2 70 51.4
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 1.3e-06 56.2 64 51.6
Potri.010G003900 Populus trichocarpa HOM05D002165 ORTHO05D001531 1.3e-06 56.2 67 46.3
Sed0012842 Sechium edule HOM05D002165 ORTHO05D001531 1.3e-06 56.2 40 62.5
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-06 55.8 80 46.2
Oeu062787.1 Olea europaea HOM05D002165 ORTHO05D001531 1.8e-06 55.8 72 47.2
Psat6g156960 Pisum sativum HOM05D008018 ORTHO05D001531 1.8e-06 55.8 71 40.8
Solyc01g101260.2 Solanum lycopersicum HOM05D002165 ORTHO05D001531 1.8e-06 55.8 55 52.7
Sopen01g044710 Solanum pennellii HOM05D002165 ORTHO05D001531 1.8e-06 55.8 55 52.7
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 1.8e-06 55.8 75 46.7
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 2.3e-06 55.5 59 54.2
COL.COLO4_36933 Corchorus olitorius HOM05D002165 ORTHO05D001531 2.3e-06 55.5 83 42.2
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 2.3e-06 55.5 73 43.8
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.3e-06 55.5 70 45.7
QL03p011084 Quercus lobata HOM05D016210 ORTHO05D001531 2.3e-06 55.5 73 47.9
Sed0011742 Sechium edule HOM05D002165 ORTHO05D001531 2.3e-06 55.5 80 43.8
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 3.0e-06 55.1 71 52.1
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 3.0e-06 55.1 57 43.9
Medtr0187s0050 Medicago truncatula HOM05D008018 ORTHO05D001531 3.0e-06 55.1 68 44.1
Medtr0187s0070 Medicago truncatula HOM05D008018 ORTHO05D001531 3.0e-06 55.1 68 44.1
Psat6g154000 Pisum sativum HOM05D008018 ORTHO05D001531 3.0e-06 55.1 80 43.8
Psat6g154160 Pisum sativum HOM05D008018 ORTHO05D001531 3.0e-06 55.1 71 40.8
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 3.9e-06 54.7 67 53.7
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 3.9e-06 54.7 67 53.7
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 3.9e-06 54.7 67 53.7
Eucgr.H01323 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.9e-06 54.7 76 43.4
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.9e-06 54.7 80 45.0
Lj5g0000373 Lotus japonicus HOM05D008018 ORTHO05D001531 3.9e-06 54.7 65 44.6
Lj5g0007331 Lotus japonicus HOM05D008018 ORTHO05D001531 3.9e-06 54.7 65 44.6
Sed0018176 Sechium edule HOM05D002165 ORTHO05D001531 3.9e-06 54.7 72 43.1
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 3.9e-06 54.7 72 50.0
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 3.9e-06 54.7 72 50.0
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 3.9e-06 54.7 69 49.3
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 5.1e-06 54.3 68 48.5
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 5.1e-06 54.3 72 48.6
Ca_10205_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 5.1e-06 54.3 79 41.8
DCAR_001886 Daucus carota HOM05D002165 ORTHO05D001531 5.1e-06 54.3 70 50.0
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 5.1e-06 54.3 59 50.8
Medtr0187s0020 Medicago truncatula HOM05D008018 ORTHO05D001531 5.1e-06 54.3 72 43.1
CSS0028703 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 6.7e-06 53.9 67 49.3
DCAR_001884 Daucus carota HOM05D002165 ORTHO05D001531 6.7e-06 53.9 55 56.4
ECA240G0021 Erigeron canadensis HOM05D002165 ORTHO05D001531 6.7e-06 53.9 73 41.1
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.7e-06 53.9 79 43.0
AUR62006822 Chenopodium quinoa HOM05D002165 ORTHO05D001531 8.7e-06 53.5 41 65.9
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 8.7e-06 53.5 57 56.1
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 8.7e-06 53.5 77 40.3
Medtr1g084920 Medicago truncatula HOM05D008018 ORTHO05D001531 8.7e-06 53.5 71 43.7
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 8.7e-06 53.5 72 48.6


User provided reference genes

Program Settings