Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002702 Sechium edule HOM05D007778 ORTHO05D009819 1.2e-77 293.1 151 100.0
CsaV3_5G020220 Cucumis sativus L. HOM05D007778 ORTHO05D009819 1.2e-45 186.8 155 69.0
MELO3C025069.2 Cucumis melo HOM05D007778 ORTHO05D009819 7.9e-45 184.1 155 67.1
ClCG01G008280 Citrullus lanatus HOM05D007778 ORTHO05D009819 1.9e-43 179.5 155 67.1
Thecc.04G114700 Theobroma cacao HOM05D007778 ORTHO05D009819 6.1e-29 131.3 145 51.7
Cpa.g.sc116.56 Carica papaya HOM05D007778 ORTHO05D009819 2.2e-26 122.9 138 48.6
Duzib211G0615 Durio zibethinus HOM05D007778 ORTHO05D009819 4.8e-26 121.7 144 48.6
arahy.Tifrunner.gnm1.ann1.0X1LIN Arachis hypogaea HOM05D007778 ORTHO05D009819 6.3e-26 121.3 117 51.3
arahy.Tifrunner.gnm1.ann1.U19ACF Arachis hypogaea HOM05D007778 ORTHO05D009819 6.3e-26 121.3 117 51.3
Dinv17427 Davidia involucrata HOM05D007778 ORTHO05D009819 8.2e-26 120.9 121 52.9
Prupe.3G011900 Prunus persica HOM05D007778 ORTHO05D009819 1.8e-25 119.8 102 61.8
Atru.chr1.1920 Acer truncatum HOM05D007778 ORTHO05D009819 4.1e-25 118.6 90 60.0
Nitab4.5_0001485g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 1.5e-24 116.7 104 52.9
Nitab4.5_0007160g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 2.0e-24 116.3 109 53.2
CiPaw.03G008500 Carya illinoinensis HOM05D007778 ORTHO05D009819 3.4e-24 115.5 114 55.3
COL.COLO4_05993 Corchorus olitorius HOM05D007778 ORTHO05D009819 3.4e-24 115.5 91 59.3
CAN.G1228.14 Capsicum annuum HOM05D007778 ORTHO05D009819 4.5e-24 115.2 131 48.1
Ciclev10012879m.g Citrus clementina HOM05D007778 ORTHO05D009819 7.7e-24 114.4 114 49.1
FAN28G2555 Fragaria x ananassa HOM05D007778 ORTHO05D009819 1.7e-23 113.2 144 45.1
QL02p054670 Quercus lobata HOM05D007778 ORTHO05D009819 2.2e-23 112.8 123 53.7
RcHm_v2.0_Chr3g0487781 Rosa chinensis HOM05D007778 ORTHO05D009819 2.2e-23 112.8 104 56.7
FvH4_1g27614 Fragaria vesca HOM05D007778 ORTHO05D009819 2.9e-23 112.5 144 45.1
TPR.G37414 Trifolium pratense HOM05D007778 ORTHO05D009819 5.0e-23 111.7 139 46.8
Haze_14055 Corylus avellana HOM05D007778 ORTHO05D009819 8.5e-23 110.9 91 58.2
Haze_14066 Corylus avellana HOM05D007778 ORTHO05D009819 8.5e-23 110.9 91 58.2
FAN28G0539 Fragaria x ananassa HOM05D007778 ORTHO05D009819 1.1e-22 110.5 104 56.7
Cc07_g09880 Coffea canephora HOM05D007778 ORTHO05D009819 1.4e-22 110.2 91 57.1
Oeu032099.1 Olea europaea HOM05D007778 ORTHO05D009819 1.9e-22 109.8 136 47.1
Nn4g24886 Nelumbo nucifera HOM05D007778 ORTHO05D009819 2.5e-22 109.4 107 54.2
VMungo0540G2068 Vigna mungo HOM05D007778 ORTHO05D009819 2.5e-22 109.4 91 57.1
MD09G1282000 Malus domestica HOM05D007778 ORTHO05D009819 3.2e-22 109.0 102 54.9
Psat4g221240 Pisum sativum HOM05D007778 ORTHO05D009819 3.2e-22 109.0 138 44.9
Gohir.D07G082800 Gossypium hirsutum HOM05D007778 ORTHO05D009819 4.2e-22 108.6 111 50.5
Gorai.001G088400 Gossypium raimondii HOM05D007778 ORTHO05D009819 4.2e-22 108.6 111 50.5
Manes.01G118400 Manihot esculenta HOM05D007778 ORTHO05D009819 4.2e-22 108.6 91 59.3
Lalb_Chr15g0085401 Lupinus albus HOM05D007778 ORTHO05D009819 5.5e-22 108.2 114 49.1
TWI74G0094 Tripterygium wilfordii HOM05D007778 ORTHO05D009819 7.2e-22 107.8 91 54.9
Gohir.A07G078000 Gossypium hirsutum HOM05D007778 ORTHO05D009819 9.4e-22 107.5 111 49.5
Glyma.18G046700 Glycine max HOM05D007778 ORTHO05D009819 1.2e-21 107.1 88 58.0
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 2.1e-21 106.3 88 58.0
Aqoxy3G04229 Aquilegia oxysepala HOM05D007778 ORTHO05D009819 2.7e-21 105.9 92 54.3
Migut.D01632 Erythranthe guttata HOM05D007778 ORTHO05D009819 2.7e-21 105.9 88 58.0
Glyma.11G204300 Glycine max HOM05D007778 ORTHO05D009819 2.7e-21 105.9 88 58.0
PGSC0003DMG400024679 Solanum tuberosum HOM05D007778 ORTHO05D009819 2.7e-21 105.9 88 55.7
MD09G1282100 Malus domestica HOM05D007778 ORTHO05D009819 4.7e-21 105.1 101 53.5
PSO782G0382 Papaver somniferum HOM05D007778 ORTHO05D009819 1.0e-20 104.0 111 49.5
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 1.8e-20 103.2 114 49.1
Medtr3g064070 Medicago truncatula HOM05D007778 ORTHO05D009819 1.8e-20 103.2 106 50.9
SalBow7G4718 Salvia bowleyana HOM05D007778 ORTHO05D009819 3.0e-20 102.4 118 46.6
MBI06_g15669_MAGBIO Magnolia biondii HOM05D007778 ORTHO05D009819 3.9e-20 102.1 148 41.2
PGR102G3280 Punica granatum HOM05D007778 ORTHO05D009819 3.9e-20 102.1 85 57.6
Phvul.006G084300 Phaseolus vulgaris HOM05D007778 ORTHO05D009819 1.1e-19 100.5 129 45.0
Lsat_1_v5_gn_4_110701 Lactuca sativa HOM05D007778 ORTHO05D009819 1.5e-19 100.1 126 45.2
Cfa008003 Carpinus fangiana HOM05D007778 ORTHO05D009819 2.0e-19 99.8 84 57.1
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 2.6e-19 99.4 88 51.1
EL10Ac4g08900 Beta vulgaris HOM05D007778 ORTHO05D009819 3.3e-19 99.0 102 51.0
HanXRQChr09g0270391 Helianthus annuus HOM05D007778 ORTHO05D009819 5.7e-19 98.2 114 48.2
AUR62037508 Chenopodium quinoa HOM05D007778 ORTHO05D009819 7.4e-19 97.8 134 41.0
Lj6g0006010 Lotus japonicus HOM05D007778 ORTHO05D009819 7.4e-19 97.8 111 46.8
CANSAT78G1962 Cannabis sativa HOM05D007778 ORTHO05D009819 9.7e-19 97.4 91 50.5
Eucgr.C02546 Eucalyptus grandis HOM05D007778 ORTHO05D009819 9.7e-19 97.4 91 50.5
PSO063G5463 Papaver somniferum HOM05D007778 ORTHO05D009819 9.7e-19 97.4 91 52.7
AUR62004744 Chenopodium quinoa HOM05D007778 ORTHO05D009819 2.2e-18 96.3 91 48.4
Eucgr.I00539 Eucalyptus grandis HOM05D007778 ORTHO05D009819 2.8e-18 95.9 139 41.0
CSS0000221 Camellia sinensis var. sinensis HOM05D007778 ORTHO05D009819 4.8e-18 95.1 130 45.4
Eucgr.C02480 Eucalyptus grandis HOM05D007778 ORTHO05D009819 8.2e-18 94.4 91 48.4
Lj5P133T80 Lonicera japonica HOM05D007778 ORTHO05D009819 1.1e-17 94.0 85 57.6
Sabra17G0107900 Salix brachista HOM05D007778 ORTHO05D009819 1.1e-17 94.0 92 51.1
FAN26G2882 Fragaria x ananassa HOM05D007778 ORTHO05D009819 2.4e-17 92.8 73 64.4
Os04g0523000 Oryza sativa ssp. japonica HOM05D007778 ORTHO05D009819 3.1e-17 92.4 95 49.5
unitig_736.g22611 Utricularia gibba HOM05D007778 ORTHO05D009819 1.6e-16 90.1 87 50.6
Potri.017G129700 Populus trichocarpa HOM05D007778 ORTHO05D009819 2.0e-16 89.7 166 38.0
Duzib133G0400 Durio zibethinus HOM05D007778 ORTHO05D009819 1.3e-15 87.0 92 50.0
Zm00001eb077030 Zea mays HOM05D007778 ORTHO05D009819 8.5e-15 84.3 85 50.6
Rhsim08G0144800 Rhododendron simsii HOM05D007778 ORTHO05D009819 3.6e-13 79.0 85 51.8
Sp5g21340 Schrenkiella parvula HOM05D007778 ORTHO05D009819 1.0e-12 77.4 80 47.5
BcaB05g24166 Brassica carinata HOM05D007778 ORTHO05D009819 2.3e-12 76.3 80 46.2
THA.LOC104823842 Tarenaya hassleriana HOM05D007778 ORTHO05D009819 6.7e-12 74.7 93 41.9
ATR0618G409 Amborella trichopoda HOM05D007778 ORTHO05D009819 8.8e-12 74.3 87 43.7
Carub.0005s0093 Capsella rubella HOM05D007778 ORTHO05D009819 1.5e-11 73.6 80 43.8
AL5G11050 Arabidopsis lyrata HOM05D007778 ORTHO05D009819 2.6e-11 72.8 158 34.2
AT2G01918 Arabidopsis thaliana HOM05D007778 ORTHO05D009819 2.6e-11 72.8 80 43.8
CARHR144520 Cardamine hirsuta HOM05D007778 ORTHO05D009819 3.3e-11 72.4 96 39.6
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 8.2e-10 67.8 80 40.0
BraA02t06417Z Brassica rapa HOM05D003087 ORTHO05D009819 8.2e-10 67.8 80 40.0
BcaC03g14741 Brassica carinata HOM05D007778 ORTHO05D009819 2.4e-09 66.2 80 40.0
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 2.4e-09 66.2 80 40.0
GSVIVG01000799001 Vitis vinifera HOM05D007778 ORTHO05D009819 4.5e-08 62.0 45 66.7
Aa31LG2G2990 Aethionema arabicum HOM05D007778 ORTHO05D009819 1.5e-06 57.0 80 38.8
Sabra04G0058100 Salix brachista HOM05D007778 ORTHO05D009819 2.5e-06 56.2 94 41.5
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 3.2e-06 55.8 91 35.2
Thhalv10019189m.g Eutrema salsugineum HOM05D007778 ORTHO05D009819 4.2e-06 55.5 80 35.0
Carub.0007s2015 Capsella rubella HOM05D004209 ORTHO05D004970 9.4e-06 54.3 136 28.7


User provided reference genes

Program Settings