Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002688 Sechium edule HOM05D003328 ORTHO05D003722 3.3e-110 402.1 270 100.0
Sed0000331 Sechium edule HOM05D003328 ORTHO05D003722 6.5e-58 228.4 298 55.4
ClCG07G016060 Citrullus lanatus HOM05D003328 ORTHO05D003722 8.0e-56 221.5 295 62.7
MELO3C018892.2 Cucumis melo HOM05D003328 ORTHO05D003722 1.6e-51 207.2 297 60.3
CsaV3_4G010050 Cucumis sativus L. HOM05D003328 ORTHO05D003722 9.8e-46 188.0 295 56.9
Lj1g0001231 Lotus japonicus HOM05D003328 ORTHO05D003722 1.1e-28 131.3 165 46.1
Atru.chr8.633 Acer truncatum HOM05D003328 ORTHO05D003722 1.4e-28 131.0 152 49.3
MD09G1075500 Malus domestica HOM05D003328 ORTHO05D003722 2.4e-28 130.2 179 46.4
Atru.chr8.632 Acer truncatum HOM05D003328 ORTHO05D003722 3.2e-28 129.8 152 48.7
QL02p065219 Quercus lobata HOM05D003328 ORTHO05D003722 5.4e-28 129.0 149 48.3
MD16G1014300 Malus domestica HOM05D003328 ORTHO05D003722 9.2e-28 128.3 179 45.3
TAR629G1921 Trochodendron aralioides HOM05D003328 ORTHO05D003722 1.2e-27 127.9 150 50.0
Thhalv10013771m.g Eutrema salsugineum HOM05D003328 ORTHO05D003722 1.6e-27 127.5 183 45.4
Cpa.g.sc541.5 Carica papaya HOM05D003328 ORTHO05D003722 2.0e-27 127.1 149 47.0
MD09G1075400 Malus domestica HOM05D003328 ORTHO05D003722 2.0e-27 127.1 151 49.0
PSO782G2223 Papaver somniferum HOM05D003328 ORTHO05D003722 2.0e-27 127.1 154 47.4
MD09G1074600 Malus domestica HOM05D003328 ORTHO05D003722 4.6e-27 125.9 151 48.3
CiPaw.03G082700 Carya illinoinensis HOM05D003328 ORTHO05D003722 7.8e-27 125.2 149 47.0
Gohir.D07G186200 Gossypium hirsutum HOM05D003328 ORTHO05D003722 1.3e-26 124.4 159 47.8
Gorai.001G206700 Gossypium raimondii HOM05D003328 ORTHO05D003722 1.3e-26 124.4 159 47.8
Atru.chr8.639 Acer truncatum HOM05D003328 ORTHO05D003722 1.7e-26 124.0 151 47.0
Gohir.A07G179300 Gossypium hirsutum HOM05D003328 ORTHO05D003722 1.7e-26 124.0 156 48.1
BcaNung02204 Brassica carinata HOM05D003328 ORTHO05D003722 2.3e-26 123.6 177 43.5
Rhsim08G0077500 Rhododendron simsii HOM05D003328 ORTHO05D003722 2.3e-26 123.6 144 45.1
Rhsim08G0077700 Rhododendron simsii HOM05D003328 ORTHO05D003722 2.3e-26 123.6 144 45.1
ClCG11G004980 Citrullus lanatus HOM05D003328 ORTHO05D003722 3.0e-26 123.2 141 51.1
Sp6g28340 Schrenkiella parvula HOM05D003328 ORTHO05D003722 3.0e-26 123.2 171 43.3
Ciclev10012100m.g Citrus clementina HOM05D003328 ORTHO05D003722 3.9e-26 122.9 153 45.8
Dinv33868 Davidia involucrata HOM05D003328 ORTHO05D003722 3.9e-26 122.9 164 44.5
Oeu031836.1 Olea europaea HOM05D003328 ORTHO05D003722 6.6e-26 122.1 141 48.2
vmacro18125 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 6.6e-26 122.1 150 46.0
CANSAT64G0201 Cannabis sativa HOM05D003328 ORTHO05D003722 8.6e-26 121.7 150 47.3
Actinidia18081 Actinidia chinensis HOM05D003328 ORTHO05D003722 1.1e-25 121.3 146 47.9
Aa31LG11G13800 Aethionema arabicum HOM05D003328 ORTHO05D003722 1.1e-25 121.3 177 41.2
C02p07970 Brassica napus HOM05D003328 ORTHO05D003722 1.1e-25 121.3 150 45.3
Dinv34907 Davidia involucrata HOM05D003328 ORTHO05D003722 1.5e-25 120.9 145 46.2
Psat3g203200 Pisum sativum HOM05D003328 ORTHO05D003722 1.5e-25 120.9 152 46.1
Thecc.04G106800 Theobroma cacao HOM05D003328 ORTHO05D003722 1.5e-25 120.9 151 46.4
MSTRG.2972 Avicennia marina HOM05D003328 ORTHO05D003722 1.9e-25 120.6 153 48.4
Nitab4.5_0009899g0010 Nicotiana tabacum HOM05D003328 ORTHO05D003722 1.9e-25 120.6 146 45.2
PSO063G5324 Papaver somniferum HOM05D003328 ORTHO05D003722 1.9e-25 120.6 153 45.8
Oeu062183.1 Olea europaea HOM05D003328 ORTHO05D003722 3.3e-25 119.8 141 46.8
Thecc.04G107000 Theobroma cacao HOM05D003328 ORTHO05D003722 3.3e-25 119.8 158 44.3
BcaC03g18449 Brassica carinata HOM05D003328 ORTHO05D003722 4.3e-25 119.4 179 42.5
BolC2t06720H Brassica oleracea HOM05D003328 ORTHO05D003722 4.3e-25 119.4 179 42.5
BraA02t05293Z Brassica rapa HOM05D003328 ORTHO05D003722 4.3e-25 119.4 179 41.3
Lj4A124T57 Lonicera japonica HOM05D003328 ORTHO05D003722 4.3e-25 119.4 164 43.3
TWI34G1159 Tripterygium wilfordii HOM05D003328 ORTHO05D003722 4.3e-25 119.4 164 42.7
Actinidia17606 Actinidia chinensis HOM05D003328 ORTHO05D003722 5.6e-25 119.0 150 46.0
BraA10t44393Z Brassica rapa HOM05D003328 ORTHO05D003722 5.6e-25 119.0 151 45.0
CSS0002115 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 5.6e-25 119.0 152 44.7
CSS0026022 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 5.6e-25 119.0 152 44.7
COL.COLO4_19736 Corchorus olitorius HOM05D003328 ORTHO05D003722 5.6e-25 119.0 130 51.5
Manes.02G059700 Manihot esculenta HOM05D003328 ORTHO05D003722 5.6e-25 119.0 144 45.1
Phvul.008G026300 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 5.6e-25 119.0 152 46.7
Glyma.18G274200 Glycine max HOM05D003328 ORTHO05D003722 7.3e-25 118.6 152 45.4
CARHR197550 Cardamine hirsuta HOM05D003328 ORTHO05D003722 9.5e-25 118.2 175 41.7
Aqoxy1G03531 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 1.2e-24 117.9 163 44.2
Aqoxy3G03729 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 1.2e-24 117.9 161 44.1
A10p23250 Brassica napus HOM05D003328 ORTHO05D003722 1.2e-24 117.9 149 45.0
Duzib138G1365 Durio zibethinus HOM05D003328 ORTHO05D003722 1.2e-24 117.9 163 42.9
Gohir.A07G179500 Gossypium hirsutum HOM05D003328 ORTHO05D003722 1.2e-24 117.9 151 47.0
Medtr7g016950 Medicago truncatula HOM05D003328 ORTHO05D003722 1.2e-24 117.9 156 46.2
Prupe.3G248700 Prunus persica HOM05D003328 ORTHO05D003722 1.2e-24 117.9 149 47.0
Sabra17G0086600 Salix brachista HOM05D003328 ORTHO05D003722 1.2e-24 117.9 151 46.4
BolC9t58973H Brassica oleracea HOM05D003328 ORTHO05D003722 1.6e-24 117.5 149 44.3
ECA232G1221 Erigeron canadensis HOM05D003328 ORTHO05D003722 1.6e-24 117.5 169 43.2
MBI16_g07038_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 1.6e-24 117.5 147 46.3
A02p03220 Brassica napus HOM05D003328 ORTHO05D003722 2.1e-24 117.1 179 40.8
C09p61320 Brassica napus HOM05D003328 ORTHO05D003722 2.1e-24 117.1 149 44.3
Eucgr.J01410 Eucalyptus grandis HOM05D003328 ORTHO05D003722 2.1e-24 117.1 149 47.0
Potri.004G114300 Populus trichocarpa HOM05D003328 ORTHO05D003722 2.1e-24 117.1 150 44.0
Actinidia26271 Actinidia chinensis HOM05D003328 ORTHO05D003722 2.8e-24 116.7 160 43.1
Carub.0006s1393 Capsella rubella HOM05D003328 ORTHO05D003722 2.8e-24 116.7 152 43.4
Solyc02g089250.4 Solanum lycopersicum HOM05D003328 ORTHO05D003722 2.8e-24 116.7 155 43.9
AL6G26620 Arabidopsis lyrata HOM05D003328 ORTHO05D003722 3.6e-24 116.3 174 39.7
Glyma.08G251500 Glycine max HOM05D003328 ORTHO05D003722 3.6e-24 116.3 152 46.1
Prupe.3G248600 Prunus persica HOM05D003328 ORTHO05D003722 3.6e-24 116.3 177 42.9
SGA_v2.0_scaffold148G36453 Striga asiatica HOM05D003328 ORTHO05D003722 3.6e-24 116.3 160 43.8
AT5G15780 Arabidopsis thaliana HOM05D003328 ORTHO05D003722 4.7e-24 115.9 152 42.8
Duzib211G0567 Durio zibethinus HOM05D003328 ORTHO05D003722 4.7e-24 115.9 152 44.1
Peaxi162Scf00020g02335 Petunia axillaris HOM05D003328 ORTHO05D003722 4.7e-24 115.9 154 42.9
Sabra04G0071400 Salix brachista HOM05D003328 ORTHO05D003722 4.7e-24 115.9 147 44.9
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 4.7e-24 115.9 132 48.5
MSTRG.15433 Avicennia marina HOM05D003328 ORTHO05D003722 8.1e-24 115.2 144 43.8
CSS0050346 Camellia sinensis var. sinensis HOM05D003328 ORTHO05D003722 8.1e-24 115.2 151 46.4
Gorai.001G206900 Gossypium raimondii HOM05D003328 ORTHO05D003722 8.1e-24 115.2 151 44.4
Lj2g0016580 Lotus japonicus HOM05D003328 ORTHO05D003722 8.1e-24 115.2 179 39.7
MBI19_g00148_MAGBIO Magnolia biondii HOM05D003328 ORTHO05D003722 8.1e-24 115.2 187 39.0
Rhsim10G0059400 Rhododendron simsii HOM05D003328 ORTHO05D003722 8.1e-24 115.2 159 44.0
Aqoxy3G03730 Aquilegia oxysepala HOM05D003328 ORTHO05D003722 1.1e-23 114.8 160 43.8
CsaV3_5G038710 Cucumis sativus L. HOM05D003328 ORTHO05D003722 1.1e-23 114.8 150 46.0
Sc11g0008840 Simmondsia chinensis HOM05D003328 ORTHO05D003722 1.1e-23 114.8 159 44.7
Sopen02g034040 Solanum pennellii HOM05D003328 ORTHO05D003722 1.1e-23 114.8 155 43.2
GSVIVG01036543001 Vitis vinifera HOM05D003328 ORTHO05D003722 1.4e-23 114.4 154 44.8
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.8e-23 114.0 145 46.2
Gohir.D07G186300 Gossypium hirsutum HOM05D003328 ORTHO05D003722 1.8e-23 114.0 151 45.0
Sed0005495 Sechium edule HOM05D003328 ORTHO05D003722 1.8e-23 114.0 149 45.6
Cc07_g04510 Coffea canephora HOM05D003328 ORTHO05D003722 2.3e-23 113.6 131 48.9
Hma1.2p1_0448F.1_g154830 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 2.3e-23 113.6 150 44.7
Hma1.2p1_1837F.1_g304780 Hydrangea macrophylla HOM05D003328 ORTHO05D003722 2.3e-23 113.6 149 45.0
Lsat_1_v5_gn_4_173421 Lactuca sativa HOM05D003328 ORTHO05D003722 3.1e-23 113.2 169 41.4
Potri.017G100600 Populus trichocarpa HOM05D003328 ORTHO05D003722 3.1e-23 113.2 150 43.3
TPR.G23379 Trifolium pratense HOM05D003328 ORTHO05D003722 3.1e-23 113.2 154 42.2
arahy.Tifrunner.gnm1.ann1.6PTW1V Arachis hypogaea HOM05D003328 ORTHO05D003722 4.0e-23 112.8 149 42.3
Glyma.13G051900 Glycine max HOM05D003328 ORTHO05D003722 4.0e-23 112.8 149 45.0
RcHm_v2.0_Chr2g0164841 Rosa chinensis HOM05D003328 ORTHO05D003722 4.0e-23 112.8 150 44.0
arahy.Tifrunner.gnm1.ann1.SVI1UB Arachis hypogaea HOM05D003328 ORTHO05D003722 5.2e-23 112.5 149 42.3
HanXRQChr15g0464801 Helianthus annuus HOM05D003328 ORTHO05D003722 5.2e-23 112.5 166 41.0
PGSC0003DMG400001380 Solanum tuberosum HOM05D003328 ORTHO05D003722 5.2e-23 112.5 155 42.6
MD09G1075000 Malus domestica HOM05D003328 ORTHO05D003722 6.8e-23 112.1 122 52.5
COL.COLO4_19737 Corchorus olitorius HOM05D003328 ORTHO05D003722 8.9e-23 111.7 150 44.7
MELO3C022051.2 Cucumis melo HOM05D003328 ORTHO05D003722 1.2e-22 111.3 150 44.7
RcHm_v2.0_Chr2g0164801 Rosa chinensis HOM05D003328 ORTHO05D003722 1.2e-22 111.3 150 45.3
TWI60G0197 Tripterygium wilfordii HOM05D003328 ORTHO05D003722 1.5e-22 110.9 159 42.8
vmacro05612 Vaccinium macrocarpon HOM05D003328 ORTHO05D003722 1.5e-22 110.9 179 39.7
PGR042G0257 Punica granatum HOM05D003328 ORTHO05D003722 2.0e-22 110.5 151 47.0
Hund13673 Selenicereus undatus HOM05D003328 ORTHO05D003722 5.8e-22 109.0 156 39.7
CiPaw.04G052000 Carya illinoinensis HOM05D003328 ORTHO05D003722 9.8e-22 108.2 145 43.4
CAN.G497.56 Capsicum annuum HOM05D003328 ORTHO05D003722 1.3e-21 107.8 156 41.7
FAN14G2959 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.3e-21 107.8 150 44.7
Phvul.004G042600 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 2.2e-21 107.1 162 40.7
DCAR_025455 Daucus carota HOM05D003328 ORTHO05D003722 2.9e-21 106.7 152 42.1
FvH4_6g46330 Fragaria vesca HOM05D003328 ORTHO05D003722 2.9e-21 106.7 150 42.7
Lalb_Chr02g0158801 Lupinus albus HOM05D003328 ORTHO05D003722 2.9e-21 106.7 149 41.6
Nitab4.5_0000154g0140 Nicotiana tabacum HOM05D003328 ORTHO05D003722 3.7e-21 106.3 154 40.3
VMungo0464G1663 Vigna mungo HOM05D003328 ORTHO05D003722 3.7e-21 106.3 159 42.8
AUR62023157 Chenopodium quinoa HOM05D003328 ORTHO05D003722 6.4e-21 105.5 158 43.0
DCAR_011012 Daucus carota HOM05D003328 ORTHO05D003722 1.4e-20 104.4 133 45.9
FvH4_6g46340 Fragaria vesca HOM05D003328 ORTHO05D003722 1.4e-20 104.4 150 44.0
FAN14G4737 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.4e-20 104.4 150 44.0
Medtr6g015995 Medicago truncatula HOM05D003328 ORTHO05D003722 1.4e-20 104.4 152 42.8
AUR62009478 Chenopodium quinoa HOM05D003328 ORTHO05D003722 1.9e-20 104.0 155 41.9
FAN05G3920 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.9e-20 104.0 150 44.0
FAN02G1536 Fragaria x ananassa HOM05D003328 ORTHO05D003722 2.4e-20 103.6 150 44.7
FAN09G3792 Fragaria x ananassa HOM05D003328 ORTHO05D003722 2.4e-20 103.6 150 42.7
HanXRQChr15g0489341 Helianthus annuus HOM05D003328 ORTHO05D003722 2.4e-20 103.6 164 39.0
TPR.G15938 Trifolium pratense HOM05D003328 ORTHO05D003722 2.4e-20 103.6 162 41.4
DCAR_025456 Daucus carota HOM05D003328 ORTHO05D003722 3.2e-20 103.2 150 42.7
VMungo0464G0668 Vigna mungo HOM05D003328 ORTHO05D003722 3.2e-20 103.2 170 38.2
FAN09G2798 Fragaria x ananassa HOM05D003328 ORTHO05D003722 7.1e-20 102.1 150 43.3
Glyma.13G051700 Glycine max HOM05D003328 ORTHO05D003722 7.1e-20 102.1 149 43.6
FAN05G0575 Fragaria x ananassa HOM05D003328 ORTHO05D003722 1.2e-19 101.3 150 44.0
SalBow1G5190 Salvia bowleyana HOM05D003328 ORTHO05D003722 1.2e-19 101.3 166 35.5
Duzib138G1918 Durio zibethinus HOM05D003328 ORTHO05D003722 1.6e-19 100.9 131 41.2
Phvul.004G042700 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 1.6e-19 100.9 140 42.9
Glyma.19G034900 Glycine max HOM05D003328 ORTHO05D003722 2.1e-19 100.5 149 39.6
Nitab4.5_0001434g0120 Nicotiana tabacum HOM05D003328 ORTHO05D003722 2.1e-19 100.5 150 41.3
THA.LOC104820977 Tarenaya hassleriana HOM05D003328 ORTHO05D003722 2.1e-19 100.5 119 48.7
Glyma.19G035700 Glycine max HOM05D003328 ORTHO05D003722 2.7e-19 100.1 149 41.6
BcaC04g18938 Brassica carinata HOM05D003328 ORTHO05D003722 3.5e-19 99.8 133 42.9
arahy.Tifrunner.gnm1.ann1.JWHM9L Arachis hypogaea HOM05D003328 ORTHO05D003722 4.6e-19 99.4 159 39.6
Glyma.19G035600 Glycine max HOM05D003328 ORTHO05D003722 4.6e-19 99.4 159 40.3
arahy.Tifrunner.gnm1.ann1.WJSS10 Arachis hypogaea HOM05D003328 ORTHO05D003722 6.0e-19 99.0 159 39.6
SalBow1G2513 Salvia bowleyana HOM05D003328 ORTHO05D003722 1.0e-18 98.2 126 43.7
HPP92_008278 Vanilla planifolia HOM05D003328 ORTHO05D003722 1.3e-18 97.8 123 47.2
PGSC0003DMG400001028 Solanum tuberosum HOM05D003328 ORTHO05D003722 3.9e-18 96.3 153 39.2
Migut.K00883 Erythranthe guttata HOM05D003328 ORTHO05D003722 5.1e-18 95.9 145 40.0
Hund16236 Selenicereus undatus HOM05D003328 ORTHO05D003722 1.5e-17 94.4 120 45.0
CAN.G427.4 Capsicum annuum HOM05D003328 ORTHO05D003722 1.9e-17 94.0 156 35.9
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.5e-17 93.6 152 39.5
HanXRQChr14g0452501 Helianthus annuus HOM05D003328 ORTHO05D003722 4.3e-17 92.8 159 38.4
Phvul.004G042800 Phaseolus vulgaris HOM05D003328 ORTHO05D003722 7.3e-17 92.0 156 37.8
Sopen03g010780 Solanum pennellii HOM05D003328 ORTHO05D003722 1.6e-16 90.9 148 40.5
Gorai.007G177000 Gossypium raimondii HOM05D003328 ORTHO05D003722 2.8e-16 90.1 152 40.1
Solyc03g046580.1 Solanum lycopersicum HOM05D003328 ORTHO05D003722 2.8e-16 90.1 147 39.5
Gohir.D11G166000 Gossypium hirsutum HOM05D003328 ORTHO05D003722 3.6e-16 89.7 153 36.6
Gohir.A11G159900 Gossypium hirsutum HOM05D003328 ORTHO05D003722 4.7e-16 89.4 118 44.9
MD17G1066000 Malus domestica HOM05D003328 ORTHO05D003722 1.4e-15 87.8 87 54.0
Nn3g17524 Nelumbo nucifera HOM05D003328 ORTHO05D003722 2.3e-15 87.0 113 45.1
PGR004G1231 Punica granatum HOM05D003328 ORTHO05D003722 3.1e-15 86.7 148 37.8
Nitab4.5_0001339g0060 Nicotiana tabacum HOM05D003328 ORTHO05D003722 1.7e-13 80.9 85 50.6
ECA238G2003 Erigeron canadensis HOM05D003328 ORTHO05D003722 2.2e-13 80.5 125 40.8
Peaxi162Scf01002g00114 Petunia axillaris HOM05D003328 ORTHO05D003722 7.8e-11 72.0 81 46.9
SEGI_34452 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 3.9e-10 69.7 132 34.8
SEGI_33280 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 1.9e-09 67.4 132 34.1
SEGI_16578 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.5e-09 67.0 158 33.5
Lsat_1_v5_gn_2_90181 Lactuca sativa HOM05D003328 ORTHO05D003722 7.3e-09 65.5 155 32.3
Psat1g065120 Pisum sativum HOM05D003328 ORTHO05D003722 4.4e-06 56.2 93 38.7
MD09G1074800 Malus domestica HOM05D003328 ORTHO05D003722 5.8e-06 55.8 60 46.7
THA.LOC104805529 Tarenaya hassleriana HOM05D003328 ORTHO05D003722 5.8e-06 55.8 136 31.6
SEGI_16110 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 9.9e-06 55.1 152 30.3


User provided reference genes

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