Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 8.3e-60 233.4 111 100.0
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 2.1e-39 165.6 84 91.7
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 1.9e-35 152.5 80 88.8
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 4.2e-35 151.4 85 82.4
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 5.4e-35 151.0 85 82.4
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 9.3e-35 150.2 116 68.1
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 9.3e-35 150.2 80 86.2
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 3.5e-34 148.3 80 86.2
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 3.5e-34 148.3 80 83.8
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 3.5e-34 148.3 80 83.8
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 7.9e-34 147.1 80 83.8
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 1.0e-33 146.7 80 85.0
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.3e-33 145.6 80 82.5
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 3.0e-33 145.2 80 81.2
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 3.0e-33 145.2 80 83.8
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 3.0e-33 145.2 79 82.3
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 3.0e-33 145.2 80 82.5
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 5.1e-33 144.4 80 82.5
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 6.7e-33 144.1 80 81.2
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 1.9e-32 142.5 80 82.5
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 1.9e-32 142.5 80 81.2
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.5e-32 142.1 80 81.2
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 2.5e-32 142.1 80 81.2
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 2.5e-32 142.1 80 77.5
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 4.3e-32 141.4 80 81.2
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 5.6e-32 141.0 80 80.0
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 5.6e-32 141.0 80 80.0
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 5.6e-32 141.0 80 80.0
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 1.6e-31 139.4 86 76.7
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 2.1e-31 139.0 78 82.1
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 2.1e-31 139.0 80 77.5
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 2.1e-31 139.0 78 82.1
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 8.1e-31 137.1 97 69.1
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 1.4e-30 136.3 80 77.5
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 3.1e-30 135.2 81 74.1
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 5.3e-30 134.4 75 81.3
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 9.0e-30 133.7 86 73.3
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 9.0e-30 133.7 80 71.2
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 1.2e-29 133.3 81 71.6
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 1.2e-29 133.3 81 71.6
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 5.8e-29 131.0 74 79.7
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 7.6e-29 130.6 81 71.6
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 7.6e-29 130.6 72 77.8
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.7e-28 129.4 80 68.8
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 1.7e-28 129.4 85 70.6
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 2.9e-28 128.6 85 72.9
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 8.4e-28 127.1 85 68.2
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 1.1e-27 126.7 85 67.1
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 1.1e-27 126.7 80 71.2
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 1.9e-27 125.9 83 65.1
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 1.9e-27 125.9 77 70.1
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 3.2e-27 125.2 80 65.0
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 4.2e-27 124.8 81 67.9
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 9.3e-27 123.6 83 72.3
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 1.2e-26 123.2 81 71.6
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 1.2e-26 123.2 81 71.6
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 1.6e-26 122.9 87 64.4
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 2.7e-26 122.1 81 70.4
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 2.7e-26 122.1 86 65.1
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 2.7e-26 122.1 86 65.1
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 2.7e-26 122.1 86 65.1
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 3.5e-26 121.7 80 71.2
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 6.0e-26 120.9 80 66.2
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 7.9e-26 120.6 85 64.7
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 7.9e-26 120.6 85 64.7
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 7.9e-26 120.6 85 64.7
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 7.9e-26 120.6 85 64.7
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 2.3e-25 119.0 81 67.9
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 2.3e-25 119.0 81 69.1
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 2.3e-25 119.0 81 67.9
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 2.3e-25 119.0 81 67.9
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 2.3e-25 119.0 81 67.9
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 2.3e-25 119.0 80 62.5
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 3.0e-25 118.6 81 69.1
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 3.0e-25 118.6 80 70.0
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 5.1e-25 117.9 80 61.2
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 8.7e-25 117.1 79 68.4
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 1.5e-24 116.3 85 63.5
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 1.9e-24 115.9 81 67.9
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 2.5e-24 115.5 80 67.5
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 2.5e-24 115.5 80 67.5
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 9.6e-24 113.6 81 66.7
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 1.3e-23 113.2 80 62.5
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 4.8e-23 111.3 85 61.2
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 8.2e-23 110.5 80 62.5
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 2.4e-22 109.0 87 52.9
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 1.5e-21 106.3 88 52.3
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 7.6e-21 104.0 73 68.5
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 5.7e-08 61.2 43 58.1
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 3.1e-06 55.5 42 52.4
MBI18_g28520_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 6.9e-06 54.3 36 58.3


User provided reference genes

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