Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.3e-225 786.2 423 100.0
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.7e-201 706.1 425 90.8
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 7.3e-197 690.6 423 89.4
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 1.4e-195 686.4 423 88.9
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 2.1e-188 662.5 415 87.7
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 9.0e-155 550.8 419 74.5
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 9.9e-154 547.4 416 74.0
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.7e-153 546.6 422 73.9
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.2e-153 546.2 414 74.2
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 6.4e-153 544.7 420 72.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.1e-152 543.9 423 73.0
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 3.2e-152 542.3 420 74.8
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.2e-151 540.4 416 73.1
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.7e-151 539.3 421 72.2
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.7e-151 539.3 422 72.7
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 3.5e-151 538.9 416 72.6
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.5e-151 538.9 421 72.7
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 6.0e-151 538.1 421 72.7
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 1.0e-150 537.3 419 72.3
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.0e-150 537.3 416 74.0
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 3.0e-150 535.8 416 73.1
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.1e-150 535.0 421 72.4
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.1e-149 533.9 442 69.7
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 3.3e-149 532.3 424 72.9
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 2.8e-148 529.3 422 71.1
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 2.8e-148 529.3 429 71.3
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 4.8e-148 528.5 413 70.7
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.4e-146 522.3 416 71.2
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 7.6e-146 521.2 469 66.3
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 2.2e-145 519.6 412 72.6
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.9e-145 519.2 414 69.6
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.8e-145 518.8 415 71.6
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 3.2e-144 515.8 416 70.7
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.1e-144 514.6 427 71.2
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.6e-143 513.5 422 70.9
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.0e-142 510.8 443 67.0
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 4.3e-141 505.4 412 71.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 6.3e-140 501.5 407 69.8
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.1e-139 500.7 413 70.7
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.2e-137 493.0 419 67.5
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.0e-137 491.9 421 67.7
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.1e-136 490.7 413 69.5
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.5e-136 489.6 418 69.1
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 2.7e-135 486.1 422 68.5
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 6.1e-135 485.0 409 68.9
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 1.4e-134 483.8 418 69.1
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 1.8e-134 483.4 419 68.7
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.8e-134 483.4 417 69.3
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 3.0e-134 482.6 422 67.8
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 5.1e-134 481.9 428 64.7
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.1e-133 480.7 369 75.1
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.1e-133 480.7 409 67.5
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.1e-133 480.7 420 67.6
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 3.3e-133 479.2 424 67.5
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.3e-132 477.2 422 68.2
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 6.9e-131 471.5 416 66.6
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 3.2e-128 462.6 417 66.2
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.7e-127 459.5 407 66.6
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 4.7e-127 458.8 485 59.2
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 7.9e-127 458.0 412 65.0
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 2.3e-126 456.4 423 65.7
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.0e-126 456.1 368 70.9
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 5.1e-126 455.3 412 65.3
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 5.7e-125 451.8 428 63.6
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 5.7e-125 451.8 373 70.0
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 2.4e-123 446.4 440 60.0
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.4e-123 446.4 417 63.8
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.4e-123 446.4 425 65.6
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 3.4e-122 442.6 416 63.2
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.7e-121 440.3 409 64.3
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 6.5e-121 438.3 412 60.9
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.4e-120 437.2 412 60.7
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.9e-120 436.8 423 60.8
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.5e-120 435.3 411 61.1
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 7.2e-120 434.9 428 60.5
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 4.7e-119 432.2 409 64.1
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 6.7e-118 428.3 413 61.5
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 2.6e-117 426.4 407 63.4
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 5.7e-117 425.2 371 65.8
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.8e-116 422.9 416 61.1
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 3.7e-116 422.5 425 59.1
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 4.8e-116 422.2 409 62.8
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 6.3e-116 421.8 393 63.6
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 5.3e-115 418.7 419 61.8
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 9.1e-115 417.9 443 58.9
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.2e-114 417.5 273 80.6
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 5.9e-114 415.2 401 62.6
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 7.7e-114 414.8 419 61.6
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.7e-113 413.7 425 57.9
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.1e-112 411.0 419 62.3
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.2e-111 407.5 416 59.9
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.6e-111 407.1 429 59.2
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 6.1e-111 405.2 425 58.6
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 8.0e-111 404.8 396 59.8
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.2e-110 402.1 419 58.5
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 6.7e-110 401.7 417 58.3
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 3.3e-109 399.4 384 60.7
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 3.3e-109 399.4 384 60.7
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.8e-107 393.7 420 58.6
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.7e-105 387.1 408 58.6
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 5.0e-105 385.6 310 68.1
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 2.3e-102 376.7 414 57.0
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 9.8e-101 371.3 350 61.7
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.6e-98 364.0 296 72.0
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 4.2e-96 355.9 412 54.9
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 7.2e-96 355.1 469 50.7
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 8.0e-95 351.7 422 52.1
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 4.0e-94 349.4 427 55.7
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 2.6e-93 346.7 397 58.2
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 4.1e-91 339.3 427 53.6
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.0e-86 324.7 252 70.2
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.2e-84 317.0 273 70.0
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.1e-83 314.7 307 62.5
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.9e-80 303.9 267 68.5
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 8.0e-79 298.5 261 67.4
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.1e-78 298.1 321 57.9
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 6.4e-76 288.9 336 53.0
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 7.3e-72 275.4 325 55.1
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 2.3e-70 270.4 263 63.5
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 4.0e-70 269.6 190 77.4
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 8.3e-68 261.9 417 46.5
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.9e-67 260.8 265 61.1
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.1e-67 259.6 264 59.8
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 7.1e-67 258.8 265 60.0
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.0e-65 255.0 402 44.5
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 2.5e-64 250.4 265 60.4
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.3e-64 250.0 341 51.0
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 5.8e-61 239.2 276 52.5
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.9e-56 224.2 264 55.7
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.9e-56 224.2 437 39.6
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 3.3e-56 223.4 263 56.7
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.4e-54 217.2 135 83.0
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 3.1e-54 216.9 136 82.4
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 3.9e-49 199.9 182 64.3
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 6.6e-49 199.1 444 38.5
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 9.6e-48 195.3 180 62.8
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 3.1e-46 190.3 405 40.2
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 5.3e-46 189.5 197 61.4
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 6.0e-42 176.0 124 74.2
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-40 171.4 144 62.5
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.5e-37 159.8 143 61.5
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.9e-35 154.5 556 31.7
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 2.4e-30 137.5 153 51.6
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 6.9e-22 109.4 130 54.6
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 6.7e-17 92.8 187 34.8
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 9.7e-16 89.0 229 40.2
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 4.8e-07 60.1 108 38.9
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 6.3e-07 59.7 37 73.0
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 4.1e-06 57.0 37 70.3


User provided reference genes

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