Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 4.0e-268 927.5 481 100.0
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 4.6e-232 807.7 485 86.0
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 2.1e-224 782.3 485 83.1
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 9.8e-190 667.2 588 63.9
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.6e-182 642.5 485 68.9
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 2.6e-182 642.5 485 68.9
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 4.9e-181 638.3 486 68.9
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 4.9e-181 638.3 485 67.4
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.8e-176 622.5 487 66.3
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 3.6e-176 622.1 486 67.1
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.4e-175 620.2 486 66.9
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.4e-175 620.2 485 66.4
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.3e-175 619.4 495 66.7
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 3.1e-175 619.0 495 65.9
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 6.8e-175 617.8 490 65.5
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 3.4e-174 615.5 485 66.0
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.4e-172 610.1 495 67.1
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.3e-170 602.8 505 66.5
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.1e-169 600.5 493 66.3
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.9e-169 599.7 490 64.7
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 6.8e-167 591.3 475 66.1
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 6.8e-167 591.3 488 65.0
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 8.9e-167 590.9 486 65.2
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-166 590.5 478 64.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.0e-166 589.7 459 66.9
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 2.6e-166 589.3 490 64.5
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.9e-165 585.9 490 64.3
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.1e-164 582.0 485 63.7
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 9.2e-164 580.9 498 62.4
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.2e-164 580.9 471 64.1
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.6e-163 580.1 490 63.9
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.7e-163 579.3 485 63.1
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-162 576.6 508 60.8
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 3.9e-162 575.5 498 62.2
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 3.9e-162 575.5 485 63.5
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 8.6e-162 574.3 491 62.7
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.1e-161 573.9 490 59.8
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.5e-161 573.5 485 61.6
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.3e-161 572.0 516 60.5
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 7.3e-161 571.2 504 61.7
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 9.6e-161 570.9 485 60.4
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 9.6e-161 570.9 490 59.8
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.2e-160 570.5 485 61.9
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 4.7e-160 568.5 494 62.6
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 8.1e-160 567.8 492 61.2
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.4e-159 567.0 487 60.8
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-159 567.0 463 63.7
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 8.9e-159 564.3 486 63.0
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.9e-157 559.3 487 61.2
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 3.8e-157 558.9 495 61.0
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.8e-157 558.9 435 66.7
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 3.8e-157 558.9 499 61.5
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.1e-156 557.4 488 59.8
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.1e-156 557.4 499 61.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.4e-156 557.0 489 60.9
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.4e-156 557.0 487 61.6
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.9e-156 556.6 491 58.7
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.4e-156 556.2 481 59.0
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 4.2e-156 555.4 488 61.3
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.4e-156 555.1 489 61.6
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 5.4e-156 555.1 481 60.5
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.2e-155 553.9 485 60.2
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.7e-155 552.7 491 59.5
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.0e-154 550.8 511 60.5
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 2.3e-154 549.7 498 61.0
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.0e-154 549.3 481 58.0
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.6e-153 544.3 490 61.0
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 9.6e-153 544.3 460 63.0
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 9.6e-153 544.3 502 59.2
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 6.2e-152 541.6 487 60.2
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 2.4e-151 539.7 485 58.6
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 4.0e-151 538.9 481 57.8
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.8e-149 532.3 485 59.0
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.1e-148 530.8 443 63.2
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.4e-148 529.6 544 56.2
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 9.3e-148 527.7 487 56.9
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 9.3e-148 527.7 465 62.2
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 6.0e-147 525.0 492 56.9
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 2.3e-146 523.1 489 57.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 4.3e-145 518.8 487 58.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 5.6e-145 518.5 447 62.2
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.3e-144 517.3 442 60.6
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.3e-144 517.3 494 59.5
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.1e-143 514.2 434 62.2
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.1e-143 514.2 406 65.8
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 5.3e-143 511.9 493 57.8
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 6.9e-143 511.5 508 57.1
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 2.6e-142 509.6 431 65.2
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 3.4e-142 509.2 487 56.1
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 7.6e-142 508.1 482 57.3
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 9.9e-142 507.7 458 59.4
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.7e-141 506.9 492 55.7
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 3.2e-140 502.7 517 54.0
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 9.3e-140 501.1 485 57.1
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.6e-139 500.4 487 56.1
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 4.6e-139 498.8 483 56.3
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 3.0e-138 496.1 480 55.4
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 6.7e-138 495.0 485 56.3
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.9e-137 493.4 483 56.1
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.3e-137 492.7 533 54.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 4.3e-137 492.3 482 55.8
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.3e-137 492.3 533 54.0
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 2.1e-136 490.0 482 55.8
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.1e-136 490.0 510 53.3
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-135 487.6 482 55.6
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.4e-135 487.3 483 55.7
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.5e-134 483.8 486 55.1
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.4e-134 482.6 483 53.2
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.8e-134 481.9 453 59.8
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.3e-133 480.7 485 55.7
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.7e-133 480.3 492 52.8
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 7.1e-132 474.9 493 54.8
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 6.0e-131 471.9 485 54.2
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 3.0e-130 469.5 485 53.6
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 5.1e-130 468.8 451 56.3
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.5e-129 467.2 468 54.7
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.5e-129 466.5 492 52.0
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 1.4e-127 460.7 484 52.9
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.4e-127 460.7 495 51.9
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.0e-125 454.5 487 51.7
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.7e-125 453.8 402 57.7
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.4e-124 450.7 452 54.2
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 7.9e-123 444.9 493 50.9
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.8e-122 443.7 498 52.8
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.9e-122 442.6 457 56.7
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 3.1e-119 433.0 450 53.1
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 2.1e-115 420.2 447 52.3
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.1e-114 415.6 391 55.2
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.1e-113 414.5 486 49.4
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.2e-112 410.2 216 92.6
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.4e-111 406.8 449 53.5
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 2.2e-104 383.6 487 46.6
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.4e-103 380.9 396 56.1
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.1e-103 379.8 488 49.0
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.8e-98 364.0 482 47.7
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.8e-96 356.7 408 49.8
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.8e-95 354.0 216 78.7
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.3e-93 347.8 408 50.2
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 4.2e-92 342.8 446 44.2
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 7.5e-89 332.0 450 41.3
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 4.1e-87 326.2 362 46.7
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 2.9e-85 320.1 343 53.1
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 5.5e-84 315.8 222 67.6
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.8e-82 310.8 291 52.2
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.9e-78 295.8 358 45.5
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 6.6e-77 292.4 294 49.3
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 8.9e-66 255.4 174 70.7
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.7e-53 214.5 156 69.2
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.1e-50 203.8 134 70.9
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 6.8e-50 202.6 314 44.3
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 4.1e-47 193.4 233 49.8
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 5.1e-45 186.4 267 43.8
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 7.8e-38 162.5 373 31.1
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 4.0e-34 150.2 246 32.1
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 3.2e-31 140.6 228 41.2
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 4.2e-31 140.2 192 37.5
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 4.2e-31 140.2 95 68.4
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 9.0e-26 122.5 113 64.6
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 8.4e-24 115.9 76 68.4
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.6e-22 110.2 70 70.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 7.4e-20 102.8 114 51.8
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 1.7e-16 91.7 264 27.3
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.5e-16 89.7 93 52.7
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 3.5e-14 84.0 52 69.2
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 6.9e-10 69.7 89 51.7
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.5e-09 68.6 43 72.1
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 2.2e-08 64.7 42 64.3
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.9e-08 64.3 74 48.6
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 1.9e-07 61.6 56 62.5


User provided reference genes

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