Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 8.0e-280 966.5 491 100.0
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 2.3e-263 911.8 491 94.7
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 2.4e-260 901.7 491 93.1
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 5.4e-260 900.6 491 93.3
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 4.5e-259 897.5 491 93.1
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 8.7e-226 786.9 494 81.8
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 3.3e-225 785.0 491 81.1
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 4.3e-225 784.6 491 80.9
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 5.6e-225 784.3 492 81.5
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 7.3e-225 783.9 491 81.7
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.6e-224 782.7 491 81.9
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 2.1e-224 782.3 492 82.1
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.2e-222 776.5 441 88.2
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.5e-222 776.2 490 80.6
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.0e-222 775.8 495 80.4
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 2.0e-222 775.8 483 82.6
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 3.4e-222 775.0 495 80.4
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 4.4e-222 774.6 488 80.9
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 9.9e-222 773.5 492 80.5
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.3e-221 773.1 491 79.6
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 2.2e-221 772.3 491 79.6
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 4.9e-221 771.2 490 80.2
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.4e-220 769.6 491 79.4
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 1.6e-219 766.1 489 80.4
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 4.6e-219 764.6 491 79.6
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 4.6e-219 764.6 436 88.5
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.8e-219 763.8 491 78.2
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 5.1e-218 761.1 439 86.3
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 5.1e-218 761.1 439 87.5
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 4.3e-217 758.1 497 78.1
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 7.3e-217 757.3 507 77.3
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 2.8e-216 755.4 479 80.2
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 3.6e-216 755.0 466 81.8
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.4e-215 753.1 456 84.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.8e-215 752.7 487 78.9
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.2e-214 750.0 432 87.0
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 1.5e-214 749.6 439 85.2
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 2.6e-214 748.8 436 86.2
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 3.4e-214 748.4 492 78.3
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 4.5e-214 748.0 467 80.9
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 4.5e-214 748.0 437 85.1
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 7.6e-214 747.3 436 85.8
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.3e-213 746.5 441 85.0
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.7e-213 746.1 474 79.1
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 8.4e-213 743.8 444 83.3
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 8.4e-213 743.8 468 81.4
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.4e-212 743.0 499 76.2
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.4e-212 743.0 472 80.1
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 1.4e-212 743.0 465 79.8
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.9e-212 742.7 439 85.0
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.4e-212 742.3 435 85.7
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 2.4e-212 742.3 443 82.8
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 2.4e-212 742.3 448 84.4
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 3.2e-212 741.9 441 83.9
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 5.4e-212 741.1 458 80.3
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 1.2e-211 740.0 458 80.3
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 1.2e-211 740.0 458 80.3
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 2.7e-211 738.8 458 80.3
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 3.5e-211 738.4 458 80.3
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 4.6e-211 738.0 496 78.0
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 6.0e-211 737.6 491 78.2
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 6.0e-211 737.6 449 83.1
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 7.9e-211 737.3 487 77.8
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.0e-210 736.9 486 76.7
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.0e-210 736.9 438 83.3
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 1.0e-210 736.9 464 79.1
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.0e-210 736.9 438 82.9
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.3e-210 736.5 458 79.9
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 2.3e-210 735.7 459 80.2
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.3e-210 735.7 438 82.4
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 3.0e-210 735.3 484 76.4
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 3.9e-210 734.9 443 83.5
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 3.9e-210 734.9 443 82.6
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 3.9e-210 734.9 500 74.0
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 1.1e-209 733.4 437 83.5
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 1.1e-209 733.4 438 83.8
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 1.9e-209 732.6 436 82.6
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 2.5e-209 732.3 436 83.0
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 3.3e-209 731.9 436 82.8
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 3.3e-209 731.9 435 84.1
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 4.3e-209 731.5 446 81.2
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 4.3e-209 731.5 485 76.3
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 4.3e-209 731.5 484 76.7
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 5.6e-209 731.1 446 81.2
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 7.4e-209 730.7 443 81.3
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 7.4e-209 730.7 436 82.6
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 1.6e-208 729.6 453 79.9
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 2.1e-208 729.2 459 79.3
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 2.1e-208 729.2 459 79.3
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 2.8e-208 728.8 488 76.2
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.7e-208 728.4 491 77.2
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.7e-208 728.4 489 77.1
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 6.2e-208 727.6 482 76.6
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.1e-207 726.9 486 75.5
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.1e-207 726.9 435 82.8
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.4e-207 726.5 491 77.2
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 3.1e-207 725.3 434 82.9
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 5.3e-207 724.5 459 78.9
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 7.6e-206 720.7 486 75.1
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 9.9e-206 720.3 432 82.4
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.3e-205 719.9 436 82.1
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 2.9e-205 718.8 491 76.0
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 3.8e-205 718.4 437 81.0
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 6.4e-205 717.6 436 81.2
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.9e-204 716.1 437 80.8
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 2.5e-204 715.7 483 75.2
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 9.3e-204 713.8 509 72.9
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 1.1e-201 706.8 428 83.2
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.5e-201 706.4 431 80.7
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 1.9e-201 706.1 431 81.0
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 3.7e-200 701.8 431 80.3
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 2.6e-198 695.7 495 72.5
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 7.1e-196 687.6 437 77.6
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 1.0e-194 683.7 433 77.4
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 5.7e-193 677.9 413 81.4
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.4e-188 663.3 388 84.0
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 3.3e-185 652.1 432 73.1
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 6.3e-184 647.9 433 76.0
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.9e-181 639.0 432 72.7
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 6.5e-181 637.9 443 71.6
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 3.7e-176 622.1 469 68.2
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.8e-176 621.7 427 74.0
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 1.8e-170 603.2 430 69.3
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 3.9e-170 602.1 427 70.5
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 5.3e-167 591.7 431 68.4
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.5e-166 588.6 359 81.6
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 9.1e-159 564.3 478 66.1
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 2.2e-157 559.7 428 66.6
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.3e-149 533.1 318 84.9
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 1.8e-146 523.5 315 83.2
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 2.1e-123 446.8 299 77.6
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.9e-117 426.0 438 50.2
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.9e-116 423.7 330 68.8
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 4.3e-116 422.5 258 81.8
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 2.6e-113 413.3 233 86.3
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.1e-111 407.9 258 78.7
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 7.1e-111 405.2 258 78.3
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 1.1e-95 354.8 254 72.8
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 5.3e-90 335.9 405 52.3
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 1.0e-88 331.6 201 83.1
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.0e-85 321.6 182 86.8
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 7.4e-84 315.5 179 85.5
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 3.1e-74 283.5 228 68.0
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 1.4e-69 268.1 182 74.7
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 2.5e-68 263.8 420 40.2
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 3.1e-66 256.9 217 63.1
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.3e-64 251.5 217 62.7
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.9e-64 250.4 289 48.1
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 3.8e-64 250.0 217 61.8
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 3.2e-63 246.9 239 58.2
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 3.1e-58 230.3 215 57.7
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 3.1e-58 230.3 121 89.3
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 8.2e-51 205.7 116 86.2
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 4.8e-43 179.9 188 55.3
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 2.5e-39 167.5 89 89.9
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.6e-38 163.7 95 84.2
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.1e-31 142.1 161 50.9
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 8.3e-27 125.9 127 46.5
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 1.0e-24 119.0 136 52.2
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 5.0e-24 116.7 98 60.2
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 5.6e-23 113.2 67 83.6
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 8.9e-21 105.9 206 38.8
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.6e-20 104.4 125 49.6
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 8.3e-19 99.4 64 78.1
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 5.0e-16 90.1 122 47.5
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 8.6e-16 89.4 57 77.2
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 2.5e-15 87.8 66 68.2
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 4.0e-13 80.5 45 86.7
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 2.0e-12 78.2 53 73.6
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.2e-11 74.7 48 77.1
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.1e-10 72.4 46 78.3
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.4e-10 72.0 69 59.4
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 2.1e-09 68.2 74 56.8
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.7e-08 65.1 37 86.5
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 4.3e-07 60.5 55 61.8
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 2.8e-06 57.8 31 80.6
Lsat_1_v5_gn_3_28400 Lactuca sativa HOM05D001423 ORTHO05D048396 6.2e-06 56.6 43 65.1
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 8.1e-06 56.2 58 55.2


User provided reference genes

Program Settings