Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002550 Sechium edule HOM05D006878 ORTHO05D008579 8.2e-140 500.4 250 100.0
MELO3C008189.2 Cucumis melo HOM05D006878 ORTHO05D008579 8.8e-126 453.8 250 89.6
CsaV3_2G034120 Cucumis sativus L. HOM05D006878 ORTHO05D008579 5.7e-125 451.1 250 90.0
ClCG11G007130 Citrullus lanatus HOM05D006878 ORTHO05D008579 4.9e-124 448.0 250 88.4
Ciclev10016370m.g Citrus clementina HOM05D006878 ORTHO05D008579 9.5e-104 380.6 250 74.0
Prupe.3G307100 Prunus persica HOM05D006878 ORTHO05D008579 1.8e-102 376.3 244 77.0
Thecc.04G038000 Theobroma cacao HOM05D006878 ORTHO05D008579 2.0e-101 372.9 244 75.8
MD09G1010100 Malus domestica HOM05D006878 ORTHO05D008579 4.4e-101 371.7 238 76.5
GSVIVG01033083001 Vitis vinifera HOM05D006878 ORTHO05D008579 5.4e-99 364.8 248 73.4
MD17G1000600 Malus domestica HOM05D006878 ORTHO05D008579 1.6e-98 363.2 241 74.3
Duzib147G1327 Durio zibethinus HOM05D006878 ORTHO05D008579 2.1e-98 362.8 252 70.6
Potri.001G329300 Populus trichocarpa HOM05D006878 ORTHO05D008579 3.5e-98 362.1 251 70.1
CANSAT64G0355 Cannabis sativa HOM05D006878 ORTHO05D008579 6.0e-98 361.3 249 71.5
COL.COLO4_13265 Corchorus olitorius HOM05D006878 ORTHO05D008579 6.6e-97 357.8 237 73.8
Cfa007222 Carpinus fangiana HOM05D006878 ORTHO05D008579 1.1e-96 357.1 242 73.1
Manes.15G161800 Manihot esculenta HOM05D006878 ORTHO05D008579 1.2e-95 353.6 244 69.3
TWI34G0743 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 1.2e-95 353.6 241 71.4
Actinidia05902 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.8e-95 352.4 243 72.0
QL02p071231 Quercus lobata HOM05D006878 ORTHO05D008579 2.8e-95 352.4 273 67.4
Rhsim08G0042400 Rhododendron simsii HOM05D006878 ORTHO05D008579 2.8e-95 352.4 254 69.3
Atru.chr6.2581 Acer truncatum HOM05D006878 ORTHO05D008579 3.6e-95 352.1 238 72.3
Dinv33333 Davidia involucrata HOM05D006878 ORTHO05D008579 3.6e-95 352.1 251 70.5
TAR629G1805 Trochodendron aralioides HOM05D006878 ORTHO05D008579 4.7e-95 351.7 248 71.0
Sabra16G0210700 Salix brachista HOM05D006878 ORTHO05D008579 1.8e-94 349.7 251 68.9
TWI34G1534 Tripterygium wilfordii HOM05D006878 ORTHO05D008579 2.3e-94 349.4 240 71.2
Psat3g178400 Pisum sativum HOM05D006878 ORTHO05D008579 5.2e-94 348.2 253 68.4
PGR142G3785 Punica granatum HOM05D006878 ORTHO05D008579 6.8e-94 347.8 247 68.8
TPR.G38297 Trifolium pratense HOM05D006878 ORTHO05D008579 8.9e-94 347.4 255 69.4
vmacro18351 Vaccinium macrocarpon HOM05D006878 ORTHO05D008579 8.9e-94 347.4 262 67.2
CAN.G473.102 Capsicum annuum HOM05D006878 ORTHO05D008579 3.4e-93 345.5 254 68.5
TAR371G0275 Trochodendron aralioides HOM05D006878 ORTHO05D008579 4.4e-93 345.1 246 69.5
VMungo1383G2452 Vigna mungo HOM05D006878 ORTHO05D008579 7.6e-93 344.4 254 68.5
DCAR_015107 Daucus carota HOM05D006878 ORTHO05D008579 1.7e-92 343.2 244 71.3
CSS0033487 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 2.2e-92 342.8 237 72.2
Eucgr.I01641 Eucalyptus grandis HOM05D006878 ORTHO05D008579 2.9e-92 342.4 231 72.3
Gohir.A07G228800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 2.9e-92 342.4 237 71.7
HanXRQChr14g0450611 Helianthus annuus HOM05D006878 ORTHO05D008579 2.9e-92 342.4 243 71.2
Glyma.16G056000 Glycine max HOM05D006878 ORTHO05D008579 6.4e-92 341.3 255 69.8
Gohir.D07G235800 Gossypium hirsutum HOM05D006878 ORTHO05D008579 6.4e-92 341.3 237 70.5
Gorai.001G271700 Gossypium raimondii HOM05D006878 ORTHO05D008579 6.4e-92 341.3 237 70.9
Nitab4.5_0002050g0060 Nicotiana tabacum HOM05D006878 ORTHO05D008579 8.4e-92 340.9 255 65.9
Nitab4.5_0009844g0010 Nicotiana tabacum HOM05D006878 ORTHO05D008579 8.4e-92 340.9 255 65.9
Cc07_g00890 Coffea canephora HOM05D006878 ORTHO05D008579 1.1e-91 340.5 248 68.5
RcHm_v2.0_Chr2g0175731 Rosa chinensis HOM05D006878 ORTHO05D008579 1.1e-91 340.5 278 64.0
TAR629G1038 Trochodendron aralioides HOM05D006878 ORTHO05D008579 1.1e-91 340.5 234 72.2
Lalb_Chr14g0363461 Lupinus albus HOM05D006878 ORTHO05D008579 1.4e-91 340.1 242 70.2
Lsat_1_v5_gn_2_93161 Lactuca sativa HOM05D006878 ORTHO05D008579 2.4e-91 339.3 239 69.5
Phvul.001G093000 Phaseolus vulgaris HOM05D006878 ORTHO05D008579 3.2e-91 339.0 246 70.3
FAN09G4559 Fragaria x ananassa HOM05D006878 ORTHO05D008579 1.6e-90 336.7 278 64.0
Aa31LG11G14940 Aethionema arabicum HOM05D006878 ORTHO05D008579 3.5e-90 335.5 249 68.3
BcaB01g05305 Brassica carinata HOM05D006878 ORTHO05D008579 7.8e-90 334.3 249 68.7
CSS0001354 Camellia sinensis var. sinensis HOM05D006878 ORTHO05D008579 1.0e-89 334.0 226 73.0
Aqoxy5G03335 Aquilegia oxysepala HOM05D006878 ORTHO05D008579 1.3e-89 333.6 240 70.4
AT5G14140 Arabidopsis thaliana HOM05D006878 ORTHO05D008579 1.3e-89 333.6 244 68.9
AL6G24810 Arabidopsis lyrata HOM05D006878 ORTHO05D008579 3.0e-89 332.4 244 68.9
C03p07460 Brassica napus HOM05D006878 ORTHO05D008579 3.0e-89 332.4 250 68.4
BolC3t13247H Brassica oleracea HOM05D006878 ORTHO05D008579 3.0e-89 332.4 250 68.4
arahy.Tifrunner.gnm1.ann1.1N9EHH Arachis hypogaea HOM05D006878 ORTHO05D008579 8.6e-89 330.9 240 67.9
arahy.Tifrunner.gnm1.ann1.G39TQA Arachis hypogaea HOM05D006878 ORTHO05D008579 8.6e-89 330.9 240 68.3
Peaxi162Scf00420g00554 Petunia axillaris HOM05D006878 ORTHO05D008579 8.6e-89 330.9 256 64.5
Thhalv10014409m.g Eutrema salsugineum HOM05D006878 ORTHO05D008579 1.1e-88 330.5 244 68.4
FvH4_6g53600 Fragaria vesca HOM05D006878 ORTHO05D008579 1.5e-88 330.1 277 62.5
A03p06460 Brassica napus HOM05D006878 ORTHO05D008579 1.9e-88 329.7 253 66.4
PGSC0003DMG400020210 Solanum tuberosum HOM05D006878 ORTHO05D008579 2.5e-88 329.3 254 65.0
BcaB01g06341 Brassica carinata HOM05D006878 ORTHO05D008579 3.3e-88 328.9 259 66.8
MSTRG.3257 Avicennia marina HOM05D006878 ORTHO05D008579 7.3e-88 327.8 232 69.4
SGA_v2.0_scaffold47G17597 Striga asiatica HOM05D006878 ORTHO05D008579 7.3e-88 327.8 244 68.9
Solyc02g094170.3 Solanum lycopersicum HOM05D006878 ORTHO05D008579 9.6e-88 327.4 254 65.4
Migut.K01467 Erythranthe guttata HOM05D006878 ORTHO05D008579 1.2e-87 327.0 240 66.2
Carub.0006s1234 Capsella rubella HOM05D006878 ORTHO05D008579 2.1e-87 326.2 252 67.1
FAN14G5463 Fragaria x ananassa HOM05D006878 ORTHO05D008579 3.6e-87 325.5 277 61.7
Sopen02g038800 Solanum pennellii HOM05D006878 ORTHO05D008579 3.6e-87 325.5 254 65.0
AUR62029405 Chenopodium quinoa HOM05D006878 ORTHO05D008579 6.2e-87 324.7 250 65.2
AUR62003439 Chenopodium quinoa HOM05D006878 ORTHO05D008579 8.1e-87 324.3 250 65.2
Sp6g29870 Schrenkiella parvula HOM05D006878 ORTHO05D008579 8.1e-87 324.3 244 66.8
SpUn0049_0070 Schrenkiella parvula HOM05D006878 ORTHO05D008579 8.1e-87 324.3 244 66.8
Oeu005107.2 Olea europaea HOM05D006878 ORTHO05D008579 1.4e-86 323.6 280 60.4
Sc03g0006490 Simmondsia chinensis HOM05D006878 ORTHO05D008579 8.9e-86 320.9 243 65.0
Lj1g0011001 Lotus japonicus HOM05D006878 ORTHO05D008579 3.4e-85 318.9 240 67.5
Ah.02g119990 Amaranthus hybridus HOM05D006878 ORTHO05D008579 5.8e-85 318.2 235 66.8
ECA238G1054 Erigeron canadensis HOM05D006878 ORTHO05D008579 9.9e-85 317.4 270 60.4
SalBow7G1076 Salvia bowleyana HOM05D006878 ORTHO05D008579 9.9e-85 317.4 256 63.7
Nn3g16452 Nelumbo nucifera HOM05D006878 ORTHO05D008579 1.7e-84 316.6 228 69.3
PSO478G0882 Papaver somniferum HOM05D006878 ORTHO05D008579 1.6e-82 310.1 263 62.0
CiPaw.04G036900 Carya illinoinensis HOM05D006878 ORTHO05D008579 2.1e-82 309.7 216 70.8
ATR0561G206 Amborella trichopoda HOM05D006878 ORTHO05D008579 3.0e-81 305.8 260 61.2
CARHR199200 Cardamine hirsuta HOM05D006878 ORTHO05D008579 3.0e-81 305.8 245 62.4
MBI07_g39449_MAGBIO Magnolia biondii HOM05D006878 ORTHO05D008579 6.6e-81 304.7 235 66.0
THA.LOC104821122 Tarenaya hassleriana HOM05D006878 ORTHO05D008579 2.8e-79 299.3 237 64.1
PSO017G0833 Papaver somniferum HOM05D006878 ORTHO05D008579 1.4e-78 297.0 261 62.1
SHI03949 Sapria himalayana HOM05D006878 ORTHO05D008579 5.3e-78 295.0 239 59.4
Medtr7g029090 Medicago truncatula HOM05D006878 ORTHO05D008579 1.8e-73 280.0 190 72.6
Zm00001eb112900 Zea mays HOM05D006878 ORTHO05D008579 1.8e-73 280.0 283 53.4
Os11g0498400 Oryza sativa ssp. japonica HOM05D006878 ORTHO05D008579 2.3e-73 279.6 270 53.7
CDE05G3687 Ceratophyllum demersum HOM05D000160 ORTHO05D000496 1.6e-71 273.5 226 62.4
EL10Ac6g15414 Beta vulgaris HOM05D006878 ORTHO05D008579 1.8e-70 270.0 242 58.3
Lju41C53T12 Lonicera japonica HOM05D006878 ORTHO05D008579 5.5e-67 258.5 242 59.1
Lalb_Chr22g0360351 Lupinus albus HOM05D006878 ORTHO05D008579 3.0e-65 252.7 175 71.4
Pp3c4_16130 Physcomitrium patens HOM05D006878 ORTHO05D008579 1.4e-51 207.2 256 46.1
Cpa.g.sc171.9 Carica papaya HOM05D006878 ORTHO05D008579 3.2e-51 206.1 129 73.6
SMO367G0946 Selaginella moellendorffii HOM05D006878 ORTHO05D008579 5.5e-51 205.3 222 50.9
Haze_14883 Corylus avellana HOM05D006878 ORTHO05D008579 4.6e-50 202.2 251 49.8
Ca_22814_v3 Cicer arietinum L. HOM05D006878 ORTHO05D008579 1.5e-48 197.2 253 49.0
Medtr7g029095 Medicago truncatula HOM05D006878 ORTHO05D008579 1.5e-48 197.2 254 45.3
Mapoly0041s0098 Marchantia polymorpha HOM05D006878 ORTHO05D008579 3.7e-47 192.6 268 39.9
CBR_g26294 Chara braunii HOM05D006878 ORTHO05D008579 3.8e-44 182.6 172 51.7
HPP92_022669 Vanilla planifolia HOM05D006878 ORTHO05D008579 5.5e-43 178.7 119 69.7
SEGI_11908 Sequoiadendron giganteum HOM05D006878 ORTHO05D008579 6.7e-33 145.2 120 57.5
BraA03t09977Z Brassica rapa HOM05D006878 ORTHO05D008579 9.7e-32 141.4 131 59.5
FAN02G3703 Fragaria x ananassa HOM05D006878 ORTHO05D008579 2.8e-31 139.8 151 55.6
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 1.4e-22 110.9 111 56.8
PRCOL_00001512 Prasinoderma coloniale HOM05D006878 ORTHO05D008579 2.9e-20 103.2 142 37.3
CDE05G3052 Ceratophyllum demersum HOM05D006878 ORTHO05D008579 3.2e-19 99.8 115 52.2
FAN23G0458 Fragaria x ananassa HOM05D006878 ORTHO05D008579 6.8e-09 65.5 66 54.5
FAN23G0356 Fragaria x ananassa HOM05D006878 ORTHO05D008579 3.4e-08 63.2 59 49.2
Actinidia36205 Actinidia chinensis HOM05D006878 ORTHO05D008579 2.8e-07 60.1 44 61.4


User provided reference genes

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