Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 1.1e-87 326.6 173 100.0
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.9e-74 282.7 173 84.4
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 1.2e-73 280.0 173 83.2
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 6.6e-72 274.2 173 82.1
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 8.4e-51 204.1 173 60.7
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 2.5e-50 202.6 173 62.4
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 3.2e-50 202.2 173 61.3
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 5.5e-50 201.4 172 60.5
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 3.0e-48 195.7 173 60.1
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 3.3e-47 192.2 174 57.5
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 4.3e-47 191.8 174 59.8
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.6e-46 189.9 173 57.2
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.4e-45 186.8 173 56.1
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 3.1e-45 185.7 175 58.9
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 9.0e-45 184.1 173 54.3
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 2.6e-44 182.6 173 54.9
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 3.4e-44 182.2 173 57.2
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 7.7e-44 181.0 174 56.9
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 7.7e-44 181.0 164 59.1
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 1.3e-43 180.3 173 56.6
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 1.3e-43 180.3 173 56.6
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 3.8e-43 178.7 175 57.7
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 6.5e-43 177.9 175 56.0
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 1.4e-42 176.8 173 53.8
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 2.5e-42 176.0 171 56.7
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 4.2e-42 175.3 176 55.7
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 7.2e-42 174.5 173 55.5
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 9.4e-42 174.1 173 54.9
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 9.4e-42 174.1 173 53.8
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 1.2e-41 173.7 173 54.3
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 2.1e-41 172.9 173 54.9
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 6.1e-41 171.4 176 54.5
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.8e-40 169.9 183 51.9
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 2.3e-40 169.5 172 54.1
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 3.0e-40 169.1 178 53.4
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 2.5e-39 166.0 175 52.6
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 2.5e-39 166.0 173 57.2
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 5.7e-39 164.9 164 54.3
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 7.4e-39 164.5 164 54.3
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 9.7e-39 164.1 175 52.6
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 8.2e-38 161.0 173 50.3
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 1.1e-37 160.6 177 52.5
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 3.1e-37 159.1 173 52.6
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 5.3e-37 158.3 173 49.7
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 6.9e-37 157.9 173 49.1
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 1.2e-36 157.1 175 49.7
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 1.5e-36 156.8 173 48.6
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 2.6e-36 156.0 173 49.1
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 5.9e-36 154.8 175 49.7
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.2e-35 152.9 149 54.4
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 2.2e-35 152.9 173 49.1
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 6.5e-35 151.4 169 53.3
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 8.5e-35 151.0 173 46.2
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 3.2e-34 149.1 184 50.0
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 9.4e-34 147.5 173 51.4
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 3.0e-32 142.5 124 62.9
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 5.1e-32 141.7 173 49.7
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 6.7e-32 141.4 173 46.8
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 8.8e-32 141.0 166 50.0
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 1.1e-31 140.6 173 48.6
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 1.5e-31 140.2 174 48.9
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 2.0e-31 139.8 173 44.5
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 2.6e-31 139.4 181 43.6
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 4.4e-31 138.7 173 48.0
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 4.4e-31 138.7 173 48.6
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 1.7e-30 136.7 180 42.8
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 2.2e-30 136.3 173 48.0
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 2.2e-30 136.3 136 54.4
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 4.8e-30 135.2 171 47.4
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 6.3e-30 134.8 173 47.4
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 3.1e-29 132.5 174 47.7
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 3.1e-29 132.5 176 47.2
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 3.1e-29 132.5 174 47.7
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 3.1e-29 132.5 174 47.7
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 3.1e-29 132.5 176 47.2
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 3.1e-29 132.5 178 42.1
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.2e-28 130.6 175 48.0
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 2.6e-28 129.4 181 40.9
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 2.6e-28 129.4 181 41.4
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 3.5e-28 129.0 173 43.9
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 5.9e-28 128.3 174 47.1
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 5.9e-28 128.3 174 47.1
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 1.7e-27 126.7 174 44.8
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 2.2e-27 126.3 178 42.7
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 2.2e-27 126.3 180 40.0
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 2.2e-27 126.3 180 41.1
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 6.5e-27 124.8 181 38.1
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 8.5e-27 124.4 180 38.9
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 1.5e-26 123.6 175 42.9
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 1.9e-26 123.2 182 40.7
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 2.5e-26 122.9 127 48.8
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 5.5e-26 121.7 216 32.9
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 5.5e-26 121.7 170 44.1
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 6.1e-25 118.2 203 42.4
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 3.0e-24 115.9 178 39.9
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 8.8e-24 114.4 123 48.0
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 2.8e-22 109.4 150 45.3
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 4.8e-22 108.6 106 51.9
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 1.8e-21 106.7 145 41.4
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 3.1e-21 105.9 110 51.8
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 4.1e-21 105.5 174 35.6
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 1.2e-20 104.0 128 43.0
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 1.6e-20 103.6 108 48.1
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 4.5e-20 102.1 163 40.5
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 5.5e-18 95.1 175 34.3
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 8.0e-17 91.3 88 52.3
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 1.0e-16 90.9 117 40.2
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 4.4e-15 85.5 165 35.8
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 4.8e-14 82.0 168 30.4
VMungo1127G0460 Vigna mungo HOM05D006478 ORTHO05D008071 8.3e-14 81.3 138 32.6
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 3.1e-13 79.3 50 78.0
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 4.5e-12 75.5 173 30.6
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 3.8e-11 72.4 144 32.6
CiPaw.05G217800 Carya illinoinensis HOM05D006478 ORTHO05D008071 1.1e-10 70.9 73 49.3
HPP92_020994 Vanilla planifolia HOM05D006478 ORTHO05D008071 1.6e-09 67.0 111 36.0
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 8.0e-09 64.7 49 67.3
CBR_g39926 Chara braunii HOM05D006478 ORTHO05D008071 1.0e-08 64.3 185 29.2
Medtr1g069420 Medicago truncatula HOM05D002356 ORTHO05D002546 5.2e-08 62.0 61 49.2
Nitab4.5_0001780g0030 Nicotiana tabacum HOM05D006478 ORTHO05D008071 3.4e-07 59.3 67 40.3
Aqoxy3G03161 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 2.8e-06 56.2 148 28.4


User provided reference genes

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