Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 1.0e-109 401.7 632 100.0
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 9.5e-68 262.3 638 73.5
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 3.0e-53 214.2 244 61.9
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 1.9e-36 158.3 244 62.7
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.1e-35 154.8 244 66.0
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 2.1e-35 154.8 244 66.8
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.2e-30 139.0 244 63.1
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 1.6e-30 138.7 244 62.7
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 7.9e-30 136.3 244 55.3
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.8e-29 135.2 244 33.2
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 1.8e-29 135.2 244 61.1
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 4.3e-28 130.6 244 61.5
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 6.3e-27 126.7 244 62.3
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 8.2e-27 126.3 192 69.3
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.1e-26 124.4 246 63.0
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 4.1e-26 124.0 244 62.7
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 9.0e-26 122.9 244 63.9
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 9.0e-26 122.9 244 62.7
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 9.0e-26 122.9 244 61.1
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.2e-25 122.5 244 63.9
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.5e-25 122.1 244 58.2
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 5.9e-25 120.2 244 57.8
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 7.7e-25 119.8 244 63.9
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.0e-24 119.4 244 63.5
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 2.9e-24 117.9 244 60.7
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 5.0e-24 117.1 240 58.3
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 6.5e-24 116.7 245 60.8
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 1.9e-23 115.2 244 59.8
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.6e-22 112.1 243 61.7
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 2.1e-22 111.7 246 54.9
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 2.1e-22 111.7 232 59.5
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 3.6e-22 110.9 205 66.8
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 4.6e-22 110.5 244 56.1
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 6.1e-22 110.2 206 65.5
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 7.9e-22 109.8 244 58.6
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.4e-21 109.0 244 58.6
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 2.3e-21 108.2 213 67.1
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 3.0e-21 107.8 243 59.7
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 3.9e-21 107.5 210 68.1
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 8.8e-21 106.3 228 54.8
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 1.1e-20 105.9 178 74.7
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.5e-20 105.5 243 61.3
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 2.5e-20 104.8 198 64.1
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 3.3e-20 104.4 220 63.2
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 3.3e-20 104.4 187 69.0
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 4.3e-20 104.0 203 66.5
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 5.7e-20 103.6 190 67.9
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 5.7e-20 103.6 244 52.5
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 5.7e-20 103.6 187 65.8
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 7.4e-20 103.2 190 64.2
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 9.7e-20 102.8 244 36.1
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 1.3e-19 102.4 204 62.3
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.3e-19 102.4 204 62.7
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.7e-19 102.1 245 53.1
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 1.7e-19 102.1 190 64.7
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 2.2e-19 101.7 201 66.7
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 3.7e-19 100.9 187 65.2
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 4.8e-19 100.5 190 41.1
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 4.8e-19 100.5 195 72.8
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 4.8e-19 100.5 190 32.6
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 4.8e-19 100.5 202 65.3
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 8.2e-19 99.8 192 65.1
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.1e-18 99.4 244 52.5
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 1.4e-18 99.0 192 74.0
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 1.4e-18 99.0 192 64.1
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 1.4e-18 99.0 205 62.4
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.8e-18 98.6 187 32.1
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.8e-18 98.6 204 61.8
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.8e-18 98.6 203 61.6
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.8e-18 98.6 203 60.6
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.8e-18 98.6 203 60.6
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 1.8e-18 98.6 198 69.7
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.4e-18 98.2 228 53.1
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 2.4e-18 98.2 187 38.5
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 3.1e-18 97.8 191 31.4
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 4.1e-18 97.4 200 59.0
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 4.1e-18 97.4 187 62.0
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 4.1e-18 97.4 187 62.0
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 5.3e-18 97.1 185 63.8
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 6.9e-18 96.7 187 62.0
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 6.9e-18 96.7 187 62.0
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 6.9e-18 96.7 100 49.0
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 6.9e-18 96.7 100 49.0
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 9.1e-18 96.3 187 59.9
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 1.2e-17 95.9 245 58.8
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 1.2e-17 95.9 203 60.1
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 2.0e-17 95.1 188 63.3
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 2.6e-17 94.7 244 50.0
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 3.4e-17 94.4 189 72.5
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 3.4e-17 94.4 192 64.6
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 4.5e-17 94.0 185 43.2
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 4.5e-17 94.0 213 58.2
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.5e-17 94.0 100 48.0
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 4.5e-17 94.0 248 62.1
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 4.5e-17 94.0 193 62.7
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 4.5e-17 94.0 222 56.8
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 5.9e-17 93.6 185 62.7
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 5.9e-17 93.6 214 28.5
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 5.9e-17 93.6 167 73.7
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 7.7e-17 93.2 185 62.2
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.0e-16 92.8 192 64.1
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 1.0e-16 92.8 205 61.0
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 1.0e-16 92.8 208 56.7
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 1.7e-16 92.0 185 62.2
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.7e-16 92.0 215 60.0
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.7e-16 92.0 220 60.9
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 2.2e-16 91.7 220 61.4
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 2.2e-16 91.7 185 61.1
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 2.9e-16 91.3 214 59.8
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.9e-16 91.3 214 59.8
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 2.9e-16 91.3 185 62.2
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 2.9e-16 91.3 185 62.2
TAR624G0021 Trochodendron aralioides HOM05D003689 ORTHO05D003950 2.9e-16 91.3 93 50.5
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 3.8e-16 90.9 215 60.0
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 3.8e-16 90.9 185 62.2
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 3.8e-16 90.9 205 65.9
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 3.8e-16 90.9 204 59.8
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 5.0e-16 90.5 185 65.4
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 8.5e-16 89.7 217 29.5
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 8.5e-16 89.7 185 61.6
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 8.5e-16 89.7 185 61.6
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 8.5e-16 89.7 229 61.6
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 8.5e-16 89.7 229 61.6
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 1.1e-15 89.4 182 60.4
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.4e-15 89.0 185 62.7
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.9e-15 88.6 193 56.0
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 3.2e-15 87.8 204 58.8
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 5.5e-15 87.0 220 62.3
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 7.2e-15 86.7 229 38.0
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 2.7e-14 84.7 204 56.9
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 4.7e-14 84.0 220 61.8
MD15G1097800 Malus domestica HOM05D003689 ORTHO05D003950 4.7e-14 84.0 104 46.2
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 4.7e-14 84.0 208 29.3
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 6.1e-14 83.6 224 62.5
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 7.9e-14 83.2 185 45.4
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 7.9e-14 83.2 185 46.5
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 3.0e-13 81.3 176 65.9
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 5.1e-13 80.5 165 64.2
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 6.7e-13 80.1 168 30.4
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.6e-12 78.2 106 41.5
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 3.3e-12 77.8 79 49.4
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 3.3e-12 77.8 63 61.9
Cpa.g.sc78.82 Carica papaya HOM05D003689 ORTHO05D003950 4.4e-12 77.4 50 70.0
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 5.7e-12 77.0 84 53.6
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 7.4e-12 76.6 189 59.3
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 9.7e-12 76.3 117 43.6
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 9.7e-12 76.3 210 61.0
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.3e-11 75.9 163 66.9
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.7e-11 75.5 166 63.9
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 2.2e-11 75.1 81 46.9
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 2.2e-11 75.1 199 59.8
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 2.2e-11 75.1 185 25.4
Nn7g35992 Nelumbo nucifera HOM05D003689 ORTHO05D003950 2.8e-11 74.7 91 45.1
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 3.7e-11 74.3 229 52.4
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 3.7e-11 74.3 78 46.2
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 3.7e-11 74.3 61 63.9
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 6.3e-11 73.6 68 52.9
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 6.3e-11 73.6 76 50.0
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 6.3e-11 73.6 185 56.8
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 8.2e-11 73.2 106 43.4
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 1.1e-10 72.8 166 65.1
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 1.4e-10 72.4 185 55.7
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.4e-10 72.4 196 53.1
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 1.8e-10 72.0 118 38.1
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 1.8e-10 72.0 65 52.3
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 3.1e-10 71.2 78 44.9
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 7.0e-10 70.1 201 61.2
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 7.0e-10 70.1 201 61.2
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 1.2e-09 69.3 58 55.2
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 1.2e-09 69.3 156 32.1
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.5e-09 68.9 63 57.1
Migut.E01508 Erythranthe guttata HOM05D003689 ORTHO05D003950 3.5e-09 67.8 46 60.9
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 2.2e-08 65.1 166 64.5
Potri.006G242600 Populus trichocarpa HOM05D003689 ORTHO05D003950 2.2e-08 65.1 78 42.3
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 2.9e-08 64.7 121 39.7
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 2.9e-08 64.7 76 42.1
Rhsim02G0182300 Rhododendron simsii HOM05D003689 ORTHO05D003950 3.2e-07 61.2 77 44.2
Lj8A603G55 Lonicera japonica HOM05D003689 ORTHO05D003950 5.5e-07 60.5 193 26.4
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 2.1e-06 58.5 61 47.5
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 2.1e-06 58.5 76 42.1
EL10Ac8g18472 Beta vulgaris HOM05D003689 ORTHO05D003950 2.7e-06 58.2 43 62.8
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 2.7e-06 58.2 53 54.7
SEGI_12691 Sequoiadendron giganteum HOM05D003689 ORTHO05D003950 6.1e-06 57.0 70 41.4


User provided reference genes

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