Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 1.2e-233 812.8 407 100.0
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 9.7e-207 723.4 407 89.2
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 4.8e-206 721.1 408 89.2
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 7.0e-205 717.2 407 88.7
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 9.2e-181 637.1 408 76.7
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 1.5e-178 629.8 407 75.9
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.3e-178 628.6 408 76.0
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 4.3e-178 628.2 407 75.7
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 8.0e-177 624.0 406 75.4
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.8e-176 622.9 403 75.4
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 3.1e-176 622.1 408 75.2
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 3.1e-176 622.1 403 75.4
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 3.1e-176 622.1 408 74.8
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 4.0e-176 621.7 408 75.2
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 6.8e-176 620.9 411 73.5
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.5e-175 619.8 408 74.3
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 3.4e-175 618.6 403 75.2
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 4.4e-175 618.2 408 74.3
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 1.9e-173 612.8 408 74.0
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 1.9e-173 612.8 408 74.0
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 3.2e-173 612.1 409 72.9
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 4.1e-173 611.7 408 74.5
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 7.0e-173 610.9 408 73.5
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.5e-172 608.6 401 74.1
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 6.0e-172 607.8 408 73.8
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 6.0e-172 607.8 408 74.8
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 7.8e-172 607.4 401 74.1
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 1.0e-171 607.1 408 72.8
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 2.3e-171 605.9 406 73.6
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 2.3e-171 605.9 406 73.6
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 2.3e-171 605.9 408 74.5
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 3.0e-171 605.5 408 73.3
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 6.6e-171 604.4 407 74.0
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 1.5e-170 603.2 409 74.1
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 1.5e-170 603.2 406 73.2
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 3.3e-170 602.1 408 72.1
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 2.1e-169 599.4 407 71.5
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 1.4e-168 596.7 408 72.5
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 8.9e-168 594.0 406 71.4
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 8.9e-168 594.0 398 73.4
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.0e-167 592.8 398 73.1
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.0e-167 592.8 404 73.0
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 7.5e-167 590.9 408 71.1
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 7.5e-167 590.9 408 71.8
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 6.4e-166 587.8 409 70.7
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 1.1e-165 587.0 401 71.8
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.4e-165 586.6 407 71.3
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 3.2e-165 585.5 406 70.2
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 6.0e-164 581.3 408 71.3
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 7.8e-164 580.9 406 70.2
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 3.0e-163 578.9 408 69.1
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 8.6e-163 577.4 407 69.3
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 1.1e-162 577.0 408 71.8
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 1.1e-162 577.0 412 69.9
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.5e-162 576.6 408 69.6
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 1.9e-162 576.2 412 71.1
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 4.3e-162 575.1 411 69.1
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 5.6e-162 574.7 408 70.1
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 7.3e-162 574.3 412 69.9
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.6e-161 573.2 408 70.1
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 2.1e-161 572.8 417 69.5
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 2.1e-161 572.8 417 69.5
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 2.1e-161 572.8 417 69.5
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 3.6e-161 572.0 417 69.8
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.7e-161 571.6 407 68.6
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 4.7e-161 571.6 405 70.4
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 8.1e-161 570.9 417 69.5
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 8.1e-161 570.9 406 68.7
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.1e-160 570.5 408 70.1
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 4.0e-160 568.5 402 70.1
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 8.9e-160 567.4 406 70.2
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 8.9e-160 567.4 409 69.2
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 1.2e-159 567.0 406 69.0
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 1.5e-159 566.6 409 69.9
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 5.8e-159 564.7 401 69.3
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 5.8e-159 564.7 406 69.2
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 7.6e-159 564.3 405 68.4
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 1.3e-158 563.5 406 68.7
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 2.2e-158 562.8 406 69.0
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 4.9e-158 561.6 438 66.0
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 6.4e-158 561.2 413 69.2
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 6.4e-158 561.2 400 69.0
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.9e-157 559.7 408 66.7
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 1.9e-157 559.7 406 67.7
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 1.9e-157 559.7 401 68.6
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 4.2e-157 558.5 401 68.6
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 1.2e-156 557.0 408 67.6
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 2.7e-156 555.8 405 67.7
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 6.0e-156 554.7 408 69.4
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.0e-155 553.9 401 68.1
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 1.3e-155 553.5 423 65.7
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 3.9e-155 552.0 407 66.8
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 6.6e-155 551.2 393 68.2
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 1.1e-154 550.4 407 67.8
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 1.5e-154 550.1 404 68.3
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 3.3e-154 548.9 407 66.8
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 4.7e-153 545.0 400 67.5
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.8e-152 543.1 407 66.1
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 2.4e-152 542.7 402 65.9
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 1.5e-151 540.0 403 67.5
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 3.4e-151 538.9 401 66.6
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 4.4e-151 538.5 403 67.2
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 3.8e-150 535.4 405 64.0
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 3.8e-150 535.4 405 64.0
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 3.2e-149 532.3 407 64.6
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 7.8e-148 527.7 409 64.8
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.3e-147 526.2 360 71.4
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 5.1e-147 525.0 346 73.4
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 8.7e-147 524.2 392 67.1
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 7.3e-146 521.2 401 65.6
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 2.8e-145 519.2 486 56.6
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 2.2e-142 509.6 417 62.1
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 2.9e-142 509.2 404 61.6
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 2.4e-141 506.1 353 69.7
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 3.5e-140 502.3 408 63.2
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 3.9e-139 498.8 312 78.5
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.5e-138 496.9 404 60.1
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 3.8e-134 482.3 403 59.8
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.5e-130 469.5 401 56.9
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.6e-127 459.5 315 72.7
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.0e-126 457.6 401 58.1
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 4.9e-126 455.3 407 58.0
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 3.5e-124 449.1 416 55.0
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 2.1e-116 423.3 359 58.2
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 8.8e-107 391.3 273 69.6
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 2.4e-104 383.3 422 48.6
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 5.3e-104 382.1 273 68.5
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 1.2e-103 380.9 318 59.1
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 2.1e-100 370.2 410 47.6
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 6.1e-100 368.6 267 68.9
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.7e-98 361.3 412 52.7
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.3e-97 360.9 423 48.2
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 7.5e-90 335.1 406 46.1
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 9.8e-82 308.1 442 42.8
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 4.4e-74 282.7 252 59.1
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 2.6e-66 256.9 161 79.5
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 2.9e-65 253.4 173 74.0
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 4.1e-64 249.6 176 69.3
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.8e-59 234.2 213 54.5
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 1.3e-57 228.0 203 56.7
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 1.3e-54 218.0 135 78.5
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 2.5e-53 213.8 160 64.4
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 7.3e-53 212.2 339 37.2
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.1e-48 198.4 193 54.4
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 3.5e-47 193.4 148 64.2
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 4.6e-47 193.0 112 79.5
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 7.6e-34 149.1 93 76.3
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 1.0e-30 138.7 96 72.9
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 9.3e-24 115.5 97 62.9
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 1.5e-18 98.2 70 67.1
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.3e-17 95.1 327 27.5
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 2.9e-17 94.0 83 60.2
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 6.5e-09 66.2 45 66.7


User provided reference genes

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