Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002402 Sechium edule HOM05D003064 ORTHO05D001733 1.3e-85 319.7 165 100.0
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 6.4e-48 194.5 124 78.2
MELO3C014664.2 Cucumis melo HOM05D003064 ORTHO05D001733 1.0e-45 187.2 126 77.0
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 1.6e-30 136.7 114 57.0
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 7.8e-30 134.4 116 55.2
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 7.8e-30 134.4 116 55.2
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 7.8e-30 134.4 116 55.2
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 7.8e-30 134.4 116 55.2
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 3.9e-29 132.1 126 53.2
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 5.1e-29 131.7 126 52.4
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 2.8e-27 125.9 126 51.6
Duzib168G1332 Durio zibethinus HOM05D003064 ORTHO05D001733 3.6e-27 125.6 111 55.0
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 1.4e-26 123.6 121 52.9
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 3.1e-26 122.5 130 52.3
QL01p010327 Quercus lobata HOM05D003064 ORTHO05D001733 4.0e-26 122.1 122 54.1
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 9.0e-26 120.9 125 50.4
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 1.5e-25 120.2 121 51.2
BcaC04g19393 Brassica carinata HOM05D003064 ORTHO05D001733 2.6e-25 119.4 118 49.2
BolC9t58489H Brassica oleracea HOM05D003064 ORTHO05D001733 2.6e-25 119.4 118 49.2
MD03G1010800 Malus domestica HOM05D003064 ORTHO05D001733 2.6e-25 119.4 121 53.7
Manes.03G089000 Manihot esculenta HOM05D003064 ORTHO05D001733 2.6e-25 119.4 121 54.5
AL6G31410 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 4.5e-25 118.6 116 50.0
A10p19870 Brassica napus HOM05D003064 ORTHO05D001733 5.8e-25 118.2 118 48.3
BraA10t44062Z Brassica rapa HOM05D003064 ORTHO05D001733 5.8e-25 118.2 118 48.3
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 9.9e-25 117.5 121 50.4
Carub.0006s1824 Capsella rubella HOM05D003064 ORTHO05D001733 1.7e-24 116.7 116 48.3
BcaC03g15831 Brassica carinata HOM05D003064 ORTHO05D001733 2.2e-24 116.3 118 47.5
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 2.2e-24 116.3 128 50.0
Aa31LG1G14330 Aethionema arabicum HOM05D003064 ORTHO05D001733 2.9e-24 115.9 116 49.1
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 2.9e-24 115.9 128 49.2
AT5G19875 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 3.8e-24 115.5 116 48.3
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 3.8e-24 115.5 117 50.4
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 3.8e-24 115.5 121 50.4
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 4.9e-24 115.2 127 50.4
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 6.4e-24 114.8 117 50.4
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 6.4e-24 114.8 126 51.6
Sp6g24510 Schrenkiella parvula HOM05D003064 ORTHO05D001733 6.4e-24 114.8 116 49.1
BcaB08g36562 Brassica carinata HOM05D003064 ORTHO05D001733 8.4e-24 114.4 118 47.5
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 1.1e-23 114.0 116 50.0
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.4e-23 113.6 123 46.3
BcaB01g04824 Brassica carinata HOM05D003064 ORTHO05D001733 1.9e-23 113.2 116 47.4
A03p09690 Brassica napus HOM05D003064 ORTHO05D001733 1.9e-23 113.2 116 47.4
BolC3t13597H Brassica oleracea HOM05D003064 ORTHO05D001733 1.9e-23 113.2 116 47.4
BraA03t10285Z Brassica rapa HOM05D003064 ORTHO05D001733 1.9e-23 113.2 116 47.4
Cpa.g.sc119.86 Carica papaya HOM05D003064 ORTHO05D001733 2.4e-23 112.8 115 50.4
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 3.2e-23 112.5 109 49.5
Lalb_Chr10g0105471 Lupinus albus HOM05D003064 ORTHO05D001733 3.2e-23 112.5 115 50.4
BcaC04g19388 Brassica carinata HOM05D003064 ORTHO05D001733 5.4e-23 111.7 118 47.5
C09p56240 Brassica napus HOM05D003064 ORTHO05D001733 5.4e-23 111.7 118 47.5
BolC9t58493H Brassica oleracea HOM05D003064 ORTHO05D001733 5.4e-23 111.7 118 47.5
Phvul.008G217700 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 9.3e-23 110.9 127 48.8
C02p35760 Brassica napus HOM05D003064 ORTHO05D001733 1.2e-22 110.5 118 46.6
FvH4_3g44730 Fragaria vesca HOM05D003064 ORTHO05D001733 1.2e-22 110.5 124 46.0
BcaB01g04845 Brassica carinata HOM05D003064 ORTHO05D001733 2.1e-22 109.8 116 45.7
CARHR192990 Cardamine hirsuta HOM05D003064 ORTHO05D001733 3.5e-22 109.0 118 44.9
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 3.5e-22 109.0 128 47.7
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 4.6e-22 108.6 115 46.1
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 6.0e-22 108.2 122 52.5
PGR119G0056 Punica granatum HOM05D003064 ORTHO05D001733 6.0e-22 108.2 128 49.2
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 7.9e-22 107.8 125 47.2
Haze_22989 Corylus avellana HOM05D003064 ORTHO05D001733 1.0e-21 107.5 88 56.8
Sc09g0000290 Simmondsia chinensis HOM05D003064 ORTHO05D001733 1.0e-21 107.5 118 48.3
Atru.chr3.2230 Acer truncatum HOM05D003064 ORTHO05D001733 1.8e-21 106.7 89 56.2
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.8e-21 106.7 109 50.5
Thhalv10015028m.g Eutrema salsugineum HOM05D003064 ORTHO05D001733 3.9e-21 105.5 116 46.6
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.1e-20 104.0 127 48.8
Ciclev10017191m.g Citrus clementina HOM05D003064 ORTHO05D001733 1.9e-20 103.2 122 48.4
Medtr5g084250 Medicago truncatula HOM05D003064 ORTHO05D001733 1.9e-20 103.2 122 47.5
ATR0598G068 Amborella trichopoda HOM05D003064 ORTHO05D001733 2.5e-20 102.8 127 44.1
PGR102G0542 Punica granatum HOM05D003064 ORTHO05D001733 4.3e-20 102.1 135 45.2
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 5.6e-20 101.7 119 42.0
GSVIVG01001351001 Vitis vinifera HOM05D003064 ORTHO05D001733 7.4e-20 101.3 134 41.8
Nn7g35954 Nelumbo nucifera HOM05D003064 ORTHO05D001733 9.6e-20 100.9 99 50.5
Prupe.2G001900 Prunus persica HOM05D003064 ORTHO05D001733 9.6e-20 100.9 105 48.6
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 9.6e-20 100.9 105 51.4
CSS0002758 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 1.6e-19 100.1 108 49.1
CsaV3_7G031520 Cucumis sativus L. HOM05D003064 ORTHO05D001733 1.6e-19 100.1 105 49.5
HanXRQChr02g0056621 Helianthus annuus HOM05D003064 ORTHO05D001733 1.6e-19 100.1 119 42.9
CSS0014301 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 2.1e-19 99.8 125 45.6
Ca_03208_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 2.1e-19 99.8 106 51.9
Oeu060706.1 Olea europaea HOM05D003064 ORTHO05D001733 2.8e-19 99.4 103 49.5
Aqoxy1G00039 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 4.8e-19 98.6 121 47.1
ClCG09G003670 Citrullus lanatus HOM05D003064 ORTHO05D001733 6.2e-19 98.2 105 50.5
Manes.10G152800 Manihot esculenta HOM05D003064 ORTHO05D001733 8.1e-19 97.8 117 45.3
Migut.B01404 Erythranthe guttata HOM05D003064 ORTHO05D001733 1.1e-18 97.4 105 49.5
Potri.001G009200 Populus trichocarpa HOM05D003064 ORTHO05D001733 1.1e-18 97.4 117 44.4
Sed0005920 Sechium edule HOM05D003064 ORTHO05D001733 1.4e-18 97.1 105 48.6
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 2.4e-18 96.3 106 48.1
Lalb_Chr25g0283731 Lupinus albus HOM05D003064 ORTHO05D001733 3.1e-18 95.9 106 48.1
unitig_749.g13489 Utricularia gibba HOM05D002499 ORTHO05D002812 3.1e-18 95.9 130 44.6
Lj3g0018900 Lotus japonicus HOM05D003064 ORTHO05D001733 4.0e-18 95.5 106 47.2
Rhsim01G0185600 Rhododendron simsii HOM05D003064 ORTHO05D001733 4.0e-18 95.5 132 45.5
Sabra09G0016100 Salix brachista HOM05D003064 ORTHO05D001733 4.0e-18 95.5 113 44.2
Sed0014538 Sechium edule HOM05D003064 ORTHO05D001733 4.0e-18 95.5 106 50.0
arahy.Tifrunner.gnm1.ann1.ZL4T1U Arachis hypogaea HOM05D003064 ORTHO05D001733 5.3e-18 95.1 92 54.3
MSTRG.17073 Avicennia marina HOM05D003064 ORTHO05D001733 6.9e-18 94.7 104 49.0
Phvul.005G042500 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 6.9e-18 94.7 107 47.7
arahy.Tifrunner.gnm1.ann1.GF7MHW Arachis hypogaea HOM05D003064 ORTHO05D001733 9.0e-18 94.4 92 53.3
BcaC02g11300 Brassica carinata HOM05D003064 ORTHO05D001733 9.0e-18 94.4 106 49.1
C04p17820 Brassica napus HOM05D003064 ORTHO05D001733 9.0e-18 94.4 106 49.1
BolC4t23330H Brassica oleracea HOM05D003064 ORTHO05D001733 9.0e-18 94.4 106 49.1
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 9.0e-18 94.4 125 44.0
CANSAT11G1331 Cannabis sativa HOM05D003064 ORTHO05D001733 1.2e-17 94.0 111 45.9
Cc02_g26840 Coffea canephora HOM05D003064 ORTHO05D001733 1.2e-17 94.0 103 48.5
Oeu049545.1 Olea europaea HOM05D003064 ORTHO05D001733 1.2e-17 94.0 130 43.8
THA.LOC104826176 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.2e-17 94.0 104 50.0
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 1.5e-17 93.6 105 42.9
Cfa010704 Carpinus fangiana HOM05D003064 ORTHO05D001733 2.0e-17 93.2 118 40.7
Potri.009G024500 Populus trichocarpa HOM05D003064 ORTHO05D001733 2.0e-17 93.2 108 44.4
BcaB02g10426 Brassica carinata HOM05D003064 ORTHO05D001733 2.6e-17 92.8 106 47.2
Glyma.08G158500 Glycine max HOM05D003064 ORTHO05D001733 2.6e-17 92.8 106 49.1
PGSC0003DMG400028989 Solanum tuberosum HOM05D003064 ORTHO05D001733 3.4e-17 92.4 105 46.7
A05p13650 Brassica napus HOM05D003064 ORTHO05D001733 5.8e-17 91.7 106 47.2
BraA05t20303Z Brassica rapa HOM05D003064 ORTHO05D001733 5.8e-17 91.7 106 47.2
Glyma.15G267900 Glycine max HOM05D003064 ORTHO05D001733 5.8e-17 91.7 107 47.7
Hma1.2p1_0128F.1_g059830 Hydrangea macrophylla HOM05D003064 ORTHO05D001733 5.8e-17 91.7 91 51.6
PSO339G6128 Papaver somniferum HOM05D003064 ORTHO05D001733 5.8e-17 91.7 131 41.2
PSO384G3054 Papaver somniferum HOM05D003064 ORTHO05D001733 5.8e-17 91.7 131 41.2
Aa31LG5G5080 Aethionema arabicum HOM05D003064 ORTHO05D001733 9.9e-17 90.9 105 47.6
Sopen01g033250 Solanum pennellii HOM05D003064 ORTHO05D001733 9.9e-17 90.9 105 45.7
Haze_03274 Corylus avellana HOM05D003064 ORTHO05D001733 1.3e-16 90.5 125 39.2
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 1.7e-16 90.1 105 45.7
VMungo1080G1851 Vigna mungo HOM05D003064 ORTHO05D001733 3.8e-16 89.0 107 48.6
CAN.G1361.1 Capsicum annuum HOM05D003064 ORTHO05D001733 4.9e-16 88.6 104 44.2
Potri.001G231300 Populus trichocarpa HOM05D003064 ORTHO05D001733 6.4e-16 88.2 108 42.6
FAN11G1424 Fragaria x ananassa HOM05D003064 ORTHO05D001733 1.1e-15 87.4 99 48.5
AT2G31940 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 1.4e-15 87.0 107 44.9
HPP92_004380 Vanilla planifolia HOM05D003064 ORTHO05D001733 1.4e-15 87.0 112 41.1
CANSAT11G2107 Cannabis sativa HOM05D003064 ORTHO05D001733 3.2e-15 85.9 110 42.7
Carub.0004s1324 Capsella rubella HOM05D003064 ORTHO05D001733 5.5e-15 85.1 109 43.1
Cc01_g01060 Coffea canephora HOM05D003064 ORTHO05D001733 5.5e-15 85.1 132 40.2
AL4G27240 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 7.1e-15 84.7 107 44.9
AL80U10020 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 7.1e-15 84.7 107 44.9
Solyc10g044880.1 Solanum lycopersicum HOM05D003064 ORTHO05D001733 1.2e-14 84.0 110 48.2
Sopen10g013830 Solanum pennellii HOM05D003064 ORTHO05D001733 1.2e-14 84.0 110 48.2
Migut.N00578 Erythranthe guttata HOM05D003064 ORTHO05D001733 2.1e-14 83.2 132 42.4
Oeu032780.1 Olea europaea HOM05D003064 ORTHO05D001733 2.1e-14 83.2 112 44.6
PGSC0003DMG400015948 Solanum tuberosum HOM05D003064 ORTHO05D001733 2.1e-14 83.2 99 50.5
Zm00001eb314350 Zea mays HOM05D003064 ORTHO05D001733 2.7e-14 82.8 115 39.1
MSTRG.18858 Avicennia marina HOM05D003064 ORTHO05D001733 3.5e-14 82.4 118 40.7
Os09g0445600 Oryza sativa ssp. japonica HOM05D003064 ORTHO05D001733 1.8e-13 80.1 112 41.1
MBI13_g29639_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 2.3e-13 79.7 110 44.5
CARHR125650 Cardamine hirsuta HOM05D003064 ORTHO05D001733 3.0e-13 79.3 106 44.3
Thhalv10017436m.g Eutrema salsugineum HOM05D003064 ORTHO05D001733 3.0e-13 79.3 106 43.4
Rhsim07G0049500 Rhododendron simsii HOM05D003064 ORTHO05D001733 6.7e-13 78.2 104 43.3
Aqoxy2G00087 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 8.7e-13 77.8 123 40.7
PSO478G3040 Papaver somniferum HOM05D003064 ORTHO05D001733 8.7e-13 77.8 117 37.6
Cpa.g.sc1500.2 Carica papaya HOM05D003064 ORTHO05D001733 1.1e-12 77.4 105 41.0
PSO782G3341 Papaver somniferum HOM05D003064 ORTHO05D001733 1.9e-12 76.6 117 37.6
QL04p001663 Quercus lobata HOM05D003064 ORTHO05D001733 2.5e-12 76.3 91 41.8
Sp4g14300 Schrenkiella parvula HOM05D003064 ORTHO05D001733 1.6e-11 73.6 106 42.5
Lalb_Chr01g0014941 Lupinus albus HOM05D003064 ORTHO05D001733 3.7e-11 72.4 106 39.6
SalBow3G3394 Salvia bowleyana HOM05D003064 ORTHO05D001733 1.4e-10 70.5 127 37.0
SHI30463 Sapria himalayana HOM05D003064 ORTHO05D001733 1.5e-09 67.0 111 37.8
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 2.6e-09 66.2 109 33.0
HanXRQChr17g0564171 Helianthus annuus HOM05D003064 ORTHO05D001733 1.7e-08 63.5 103 37.9
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 1.7e-08 63.5 109 34.9
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.2e-08 63.2 71 45.1
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 2.2e-08 63.2 105 36.2
HanXRQChr16g0520931 Helianthus annuus HOM05D003064 ORTHO05D001733 3.8e-08 62.4 102 36.3
CSS0047744 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 4.9e-08 62.0 109 36.7
Potri.001G009300 Populus trichocarpa HOM05D003064 ORTHO05D001733 4.9e-08 62.0 101 36.6
Sabra01G0007200 Salix brachista HOM05D003064 ORTHO05D000001 1.4e-07 60.5 98 37.8
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.9e-07 60.1 106 33.0
CiPaw.13G171900 Carya illinoinensis HOM05D003064 ORTHO05D001733 3.2e-07 59.3 92 39.1
Atru.chr3.2225 Acer truncatum HOM05D003064 ORTHO05D001733 4.2e-07 58.9 85 42.4
Sabra03G0161100 Salix brachista HOM05D000664 ORTHO05D001733 7.1e-07 58.2 81 40.7
QL01p010317 Quercus lobata HOM05D003064 ORTHO05D001733 9.3e-07 57.8 96 37.5
VMungo0251G1179 Vigna mungo HOM05D003064 ORTHO05D001733 1.2e-06 57.4 79 41.8
MD11G1012700 Malus domestica HOM05D003064 ORTHO05D001733 1.6e-06 57.0 89 38.2
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 1.6e-06 57.0 110 29.1
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 2.1e-06 56.6 109 30.3
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 2.1e-06 56.6 112 33.0
RcHm_v2.0_Chr5g0081381 Rosa chinensis HOM05D003064 ORTHO05D001733 2.7e-06 56.2 88 38.6
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 2.7e-06 56.2 102 35.3
Potri.003G216000 Populus trichocarpa HOM05D003064 ORTHO05D001733 3.5e-06 55.8 89 38.2
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 4.6e-06 55.5 110 32.7
Ca_18172_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 4.6e-06 55.5 79 41.8
COL.COLO4_10451 Corchorus olitorius HOM05D003064 ORTHO05D001733 4.6e-06 55.5 105 36.2
Haze_22990 Corylus avellana HOM05D003064 ORTHO05D001733 6.0e-06 55.1 88 40.9
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 7.9e-06 54.7 104 33.7
Thecc.09G214600 Theobroma cacao HOM05D003064 ORTHO05D001733 7.9e-06 54.7 105 36.2


User provided reference genes

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