Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 3.5e-206 721.5 388 100.0
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 2.7e-166 589.0 430 76.7
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 2.3e-165 585.9 417 75.5
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 1.5e-164 583.2 417 75.1
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.8e-149 533.1 416 73.3
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 1.2e-134 483.8 387 65.1
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 6.8e-133 478.0 388 63.7
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 1.5e-132 476.9 386 64.8
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 2.0e-132 476.5 381 64.6
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.8e-132 474.9 387 63.6
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 5.8e-132 474.9 394 62.2
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 5.8e-132 474.9 426 59.6
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 7.5e-132 474.6 387 63.6
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.3e-131 473.8 387 63.6
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.3e-131 473.8 387 64.3
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 2.2e-131 473.0 390 68.2
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 3.7e-131 472.2 382 64.7
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 8.3e-131 471.1 387 64.3
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 1.4e-130 470.3 387 63.3
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 2.4e-130 469.5 367 65.7
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.4e-130 469.5 382 65.2
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 5.4e-130 468.4 382 66.0
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 9.2e-130 467.6 381 63.5
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 2.0e-129 466.5 381 62.7
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 2.0e-129 466.5 381 63.5
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 2.7e-129 466.1 384 62.5
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 7.8e-129 464.5 381 63.8
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 1.0e-128 464.2 387 62.3
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 1.7e-128 463.4 389 62.5
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 2.3e-128 463.0 363 66.9
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 3.9e-128 462.2 388 61.9
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 5.0e-128 461.8 381 63.3
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 6.6e-128 461.5 379 61.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 1.1e-127 460.7 438 58.0
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 1.1e-127 460.7 428 59.3
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.9e-127 459.9 379 62.3
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 2.5e-127 459.5 318 71.4
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 3.3e-127 459.1 381 63.3
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 3.3e-127 459.1 371 63.9
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 4.3e-127 458.8 384 62.0
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 4.3e-127 458.8 384 62.0
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 5.6e-127 458.4 325 69.8
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 1.2e-126 457.2 399 62.7
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 1.6e-126 456.8 401 59.9
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 6.2e-126 454.9 387 61.8
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 1.1e-125 454.1 409 63.3
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 1.1e-125 454.1 326 70.6
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 1.4e-125 453.8 408 62.3
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 1.4e-125 453.8 380 60.3
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 3.1e-125 452.6 324 69.8
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 5.2e-125 451.8 382 63.4
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 6.8e-125 451.4 395 61.0
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 6.8e-125 451.4 405 60.0
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 8.9e-125 451.1 409 63.6
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 1.2e-124 450.7 393 62.3
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 1.2e-124 450.7 324 69.4
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 2.0e-124 449.9 395 65.1
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 3.4e-124 449.1 410 63.9
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 4.4e-124 448.7 391 61.9
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 9.8e-124 447.6 367 62.4
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 1.7e-123 446.8 396 57.6
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 4.9e-123 445.3 365 64.1
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 6.4e-123 444.9 423 57.0
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 2.4e-122 443.0 401 61.8
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 2.4e-122 443.0 401 61.8
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 5.4e-122 441.8 311 70.4
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.2e-121 440.7 407 62.2
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 1.6e-121 440.3 311 69.1
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 1.3e-120 437.2 304 74.0
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 2.3e-120 436.4 402 57.7
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 1.1e-119 434.1 365 61.1
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 2.5e-119 433.0 428 54.9
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 4.3e-119 432.2 476 51.9
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 1.2e-118 430.6 380 57.6
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 1.8e-117 426.8 317 68.1
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.8e-117 426.8 436 53.9
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 6.8e-117 424.9 429 54.1
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 2.6e-116 422.9 367 59.9
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.3e-115 420.6 382 59.4
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 8.3e-115 417.9 399 58.4
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 1.1e-114 417.5 380 59.5
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.0e-112 411.0 365 59.5
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.3e-112 409.8 365 58.4
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 1.1e-111 407.5 310 65.5
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 1.9e-111 406.8 301 68.4
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 7.3e-111 404.8 301 67.8
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 7.3e-111 404.8 301 67.8
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.8e-110 402.9 368 58.4
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 3.1e-109 399.4 374 57.2
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.5e-108 397.1 388 56.2
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 2.6e-108 396.4 363 60.1
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 3.4e-108 396.0 330 62.1
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 5.8e-108 395.2 383 57.4
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.2e-107 393.3 311 64.3
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 3.8e-107 392.5 374 59.9
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 6.4e-107 391.7 380 57.1
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 3.0e-104 382.9 300 66.7
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 3.0e-104 382.9 300 66.7
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 3.3e-103 379.4 390 55.1
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 4.3e-103 379.0 365 57.5
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 5.6e-103 378.6 377 53.8
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.6e-103 377.9 365 57.3
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.6e-103 377.9 365 57.3
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.6e-102 377.1 365 57.3
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.1e-101 374.4 365 57.0
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 3.1e-101 372.9 380 52.6
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 9.9e-100 367.9 316 59.5
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 6.4e-99 365.2 317 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 8.1e-94 348.2 352 52.6
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 5.3e-93 345.5 392 49.7
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.2e-84 317.8 270 60.4
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.6e-81 307.4 310 50.6
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 7.9e-73 278.5 236 61.9
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 7.4e-71 271.9 393 44.3
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 2.7e-65 253.4 237 56.1
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 3.7e-62 243.0 223 56.5
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 9.1e-61 238.4 237 54.0
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.1e-53 214.9 147 74.1
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 2.4e-53 213.8 380 35.3
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 5.3e-53 212.6 256 49.6
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 1.6e-49 201.1 150 65.3
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.3e-46 191.4 128 73.4
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 9.1e-45 185.3 144 64.6
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.3e-38 164.9 120 62.5
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 2.8e-38 163.7 124 68.5
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 7.7e-36 155.6 115 67.0
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.4e-24 118.2 80 68.8
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 2.5e-18 97.4 72 66.7
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 1.6e-17 94.7 146 43.2
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.9e-14 84.0 66 66.7
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 1.3e-11 75.1 348 22.1
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.8e-08 64.7 55 58.2
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 1.8e-08 64.7 49 69.4
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 6.8e-08 62.8 55 61.8


User provided reference genes

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