Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 4.5e-206 721.1 376 100.0
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.9e-136 489.2 409 70.4
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 7.3e-132 474.6 408 69.1
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.3e-130 469.5 408 68.6
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 3.1e-90 336.3 403 56.3
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.3e-43 181.4 423 38.1
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 4.8e-43 179.5 442 36.7
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.1e-42 176.8 443 37.2
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.1e-42 176.4 437 37.5
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 4.1e-42 176.4 457 36.5
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 9.1e-42 175.3 448 34.2
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 1.0e-40 171.8 434 35.7
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 1.7e-40 171.0 447 34.9
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 2.2e-40 170.6 438 34.7
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 2.9e-40 170.2 427 36.8
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 8.0e-38 162.2 416 36.8
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.4e-37 161.4 365 37.5
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 2.3e-37 160.6 442 35.3
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.5e-36 157.9 461 34.5
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 4.4e-36 156.4 330 40.3
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 1.7e-35 154.5 402 36.8
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 8.3e-35 152.1 407 34.2
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 8.3e-35 152.1 454 33.7
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 4.1e-34 149.8 354 38.7
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 4.1e-34 149.8 381 35.4
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 1.3e-32 144.8 375 36.8
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 8.6e-32 142.1 400 33.2
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.3e-31 140.2 427 34.0
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 4.7e-30 136.3 409 33.3
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 6.1e-30 136.0 412 32.3
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.4e-29 134.8 434 32.5
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 3.0e-29 133.7 409 32.0
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.2e-28 131.7 399 34.3
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 5.7e-28 129.4 409 33.0
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.7e-28 129.4 368 34.2
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.5e-28 129.0 368 34.5
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.5e-28 129.0 385 33.5
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 7.5e-28 129.0 442 29.4
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 9.8e-28 128.6 425 32.2
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 2.2e-27 127.5 438 31.1
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 1.8e-26 124.4 424 32.3
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 2.4e-26 124.0 372 32.5
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 9.2e-26 122.1 391 30.9
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 9.2e-26 122.1 380 33.4
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 2.7e-25 120.6 415 32.3
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.6e-25 119.8 380 33.2
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 7.8e-25 119.0 425 30.4
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.0e-24 118.6 392 31.9
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 1.3e-24 118.2 391 31.2
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.3e-24 117.5 391 29.9
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 3.9e-24 116.7 431 29.9
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 1.1e-23 115.2 428 31.5
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 2.5e-23 114.0 386 31.9
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 3.3e-23 113.6 392 30.6
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.6e-22 111.3 408 29.2
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.6e-22 111.3 417 29.5
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 4.7e-22 109.8 369 32.0
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 2.3e-21 107.5 305 34.8
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 4.0e-21 106.7 392 31.1
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 1.2e-20 105.1 437 29.7
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.2e-20 105.1 358 33.2
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.0e-20 104.4 442 30.1
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 2.0e-20 104.4 408 30.6
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 3.4e-20 103.6 393 29.3
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 4.4e-20 103.2 380 30.5
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 4.4e-20 103.2 450 30.2
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 5.8e-20 102.8 432 28.9
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 5.8e-20 102.8 200 39.0
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 5.8e-20 102.8 435 32.0
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 7.5e-20 102.4 370 30.5
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 1.7e-19 101.3 429 27.7
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.2e-19 100.9 397 28.7
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 2.2e-19 100.9 322 33.5
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 3.7e-19 100.1 355 31.0
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 8.3e-19 99.0 401 29.2
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.9e-18 97.8 378 29.4
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 3.2e-18 97.1 387 29.2
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 4.1e-18 96.7 403 29.0
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 5.4e-18 96.3 415 29.2
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 2.0e-17 94.4 379 29.3
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 6.0e-17 92.8 444 28.6
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 6.0e-17 92.8 410 28.0
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.0e-16 92.0 274 32.8
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.0e-16 92.0 157 41.4
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 2.3e-16 90.9 353 32.6
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 2.3e-16 90.9 404 28.5
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 3.9e-16 90.1 369 28.7
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.9e-16 90.1 422 27.7
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 6.6e-16 89.4 394 29.2
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 8.6e-16 89.0 381 29.1
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.1e-15 88.6 280 30.0
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 1.1e-15 88.6 421 26.6
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.5e-15 88.2 336 32.1
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 2.5e-15 87.4 377 29.2
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 3.3e-15 87.0 390 31.8
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 5.6e-15 86.3 444 28.4
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 7.3e-15 85.9 400 27.0
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 9.5e-15 85.5 383 30.3
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 1.2e-14 85.1 423 26.2
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.6e-14 83.6 406 26.8
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 6.2e-14 82.8 401 27.7
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 1.1e-13 82.0 328 30.5
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 2.3e-13 80.9 357 27.5
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.1e-13 80.5 393 27.7
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 4.0e-13 80.1 365 28.2
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 5.2e-13 79.7 395 28.6
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 5.2e-13 79.7 418 27.0
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 1.2e-12 78.6 377 30.2
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 1.2e-12 78.6 377 30.2
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.2e-12 78.6 404 26.0
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.2e-12 78.6 406 26.8
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.5e-12 78.2 397 27.0
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 2.6e-12 77.4 397 26.2
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 2.6e-12 77.4 406 27.6
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 2.6e-12 77.4 438 29.0
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 3.4e-12 77.0 391 25.6
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 3.4e-12 77.0 372 26.9
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 5.8e-12 76.3 416 25.0
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 7.5e-12 75.9 345 26.7
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.3e-11 75.1 142 33.1
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 1.7e-11 74.7 376 28.7
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 1.7e-11 74.7 409 25.2
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 1.7e-11 74.7 424 25.0
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.2e-11 74.3 385 28.6
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.2e-11 74.3 285 29.8
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 2.2e-11 74.3 367 27.2
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 2.2e-11 74.3 367 27.2
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 4.9e-11 73.2 388 27.6
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 6.4e-11 72.8 279 31.5
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.1e-10 72.0 374 27.5
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 1.4e-10 71.6 415 26.3
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 1.4e-10 71.6 246 32.9
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 1.4e-10 71.6 414 25.4
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 4.1e-10 70.1 369 29.5
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 5.4e-10 69.7 320 29.7
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 9.2e-10 68.9 420 29.0
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 1.2e-09 68.6 358 26.3
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 1.2e-09 68.6 124 38.7
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 1.6e-09 68.2 312 29.5
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.1e-09 67.8 367 27.0
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 2.7e-09 67.4 368 29.6
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 3.5e-09 67.0 395 26.3
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 4.6e-09 66.6 266 31.2
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 4.6e-09 66.6 377 27.1
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 7.8e-09 65.9 261 30.3
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.7e-08 64.7 366 25.7
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.7e-08 64.7 378 25.7
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 3.0e-08 63.9 410 27.8
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.0e-08 63.9 356 26.7
SalBow2G1798 Salvia bowleyana HOM05D003726 ORTHO05D003520 3.0e-08 63.9 284 28.5
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 6.6e-08 62.8 302 26.5
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 1.5e-07 61.6 385 24.4
Carub.0008s1925 Capsella rubella HOM05D011448 ORTHO05D003520 2.5e-07 60.8 307 26.4
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 2.5e-07 60.8 417 25.7
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 3.3e-07 60.5 366 24.9
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 5.6e-07 59.7 429 27.0
ECA236G2409 Erigeron canadensis HOM05D000674 ORTHO05D001490 2.1e-06 57.8 358 26.0
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 4.7e-06 56.6 362 25.7
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 6.2e-06 56.2 380 25.0
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 6.2e-06 56.2 424 25.9
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 8.1e-06 55.8 400 24.2


User provided reference genes

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