Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 9.9e-106 386.7 186 100.0
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 1.0e-78 297.0 257 62.3
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 1.3e-78 296.6 256 62.5
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 1.3e-78 296.6 256 62.1
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 2.5e-77 292.4 256 61.3
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 1.2e-63 246.9 255 50.6
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 2.8e-60 235.7 257 49.8
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 1.1e-59 233.8 256 50.4
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 5.3e-59 231.5 256 50.4
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 3.4e-58 228.8 246 50.0
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 5.9e-58 228.0 256 48.0
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 1.0e-57 227.3 256 48.0
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 2.2e-57 226.1 256 47.3
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 2.9e-57 225.7 256 48.0
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 3.8e-57 225.3 253 47.4
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 2.5e-56 222.6 257 48.6
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 3.2e-56 222.2 258 47.3
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 4.2e-56 221.9 254 47.6
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 5.5e-56 221.5 256 48.0
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 1.6e-55 219.9 246 50.4
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 1.4e-54 216.9 258 46.5
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 2.3e-54 216.1 245 46.5
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 6.7e-54 214.5 256 47.3
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 8.8e-54 214.2 258 45.7
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 8.8e-54 214.2 255 45.1
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 2.0e-53 213.0 215 51.2
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 2.6e-53 212.6 249 46.2
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 2.6e-53 212.6 256 45.7
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 3.3e-53 212.2 245 47.3
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 3.3e-53 212.2 265 45.3
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 4.4e-53 211.8 256 45.3
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 5.7e-53 211.5 245 47.8
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 7.4e-53 211.1 256 46.1
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 9.7e-53 210.7 256 47.7
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 1.7e-52 209.9 251 46.6
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 2.2e-52 209.5 257 46.7
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 2.2e-52 209.5 246 47.2
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 3.7e-52 208.8 232 48.3
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 2.4e-51 206.1 256 45.7
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 3.1e-51 205.7 256 46.9
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 7.0e-51 204.5 245 45.7
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 9.1e-51 204.1 256 44.9
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 9.1e-51 204.1 256 46.1
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 4.5e-50 201.8 256 45.3
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 7.7e-50 201.1 251 45.4
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.7e-49 199.9 245 44.9
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 6.5e-49 198.0 257 41.6
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.5e-48 196.1 257 41.2
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 3.2e-48 195.7 255 43.9
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 3.2e-48 195.7 256 44.1
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 5.5e-48 194.9 258 43.0
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 7.2e-48 194.5 232 44.8
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 9.4e-48 194.1 247 44.5
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 9.4e-48 194.1 247 44.1
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 1.2e-47 193.7 258 43.4
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 1.6e-47 193.4 252 44.0
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.6e-47 193.4 245 44.1
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 2.1e-47 193.0 232 45.3
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 3.6e-47 192.2 238 44.5
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 3.6e-47 192.2 232 44.8
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 4.7e-47 191.8 280 39.3
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 6.1e-47 191.4 232 45.7
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 8.0e-47 191.0 246 44.7
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 8.0e-47 191.0 246 44.7
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 8.0e-47 191.0 246 44.7
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 8.0e-47 191.0 225 46.2
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 1.0e-46 190.7 242 43.4
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 1.4e-46 190.3 250 43.6
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.4e-46 190.3 240 42.9
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 1.4e-46 190.3 248 43.5
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 1.8e-46 189.9 258 42.2
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 1.8e-46 189.9 248 42.3
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 3.0e-46 189.1 249 44.2
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 3.0e-46 189.1 249 44.2
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 5.2e-46 188.3 256 42.6
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 6.7e-46 188.0 258 41.9
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 2.0e-45 186.4 256 42.6
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 2.0e-45 186.4 256 42.2
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 4.4e-45 185.3 232 44.0
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 5.7e-45 184.9 238 44.1
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 1.3e-44 183.7 248 41.9
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 1.3e-44 183.7 253 42.7
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 1.3e-44 183.7 253 42.7
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 1.7e-44 183.3 248 40.7
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.2e-44 183.0 243 40.7
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 2.8e-44 182.6 248 43.1
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.8e-44 182.6 243 40.7
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 6.3e-44 181.4 248 40.7
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 8.2e-44 181.0 261 41.0
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 1.1e-43 180.6 258 40.7
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 1.8e-43 179.9 247 41.3
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 9.1e-43 177.6 254 40.6
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 2.0e-42 176.4 186 49.5
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 2.0e-42 176.4 217 43.8
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 2.9e-41 172.6 257 38.9
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 2.9e-41 172.6 258 39.5
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 3.8e-41 172.2 257 39.7
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 5.0e-41 171.8 256 39.1
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 1.1e-40 170.6 249 40.2
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 4.2e-40 168.7 236 42.4
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 7.2e-40 167.9 245 37.1
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 1.6e-39 166.8 243 39.1
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 6.1e-39 164.9 263 39.9
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 6.1e-39 164.9 243 38.3
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 8.0e-39 164.5 239 38.9
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 8.0e-39 164.5 239 38.9
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 1.4e-38 163.7 246 39.4
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 5.2e-38 161.8 249 36.5
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 6.7e-38 161.4 245 39.6
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 8.8e-38 161.0 287 35.5
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 1.2e-37 160.6 253 38.3
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 2.6e-37 159.5 224 39.3
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 2.2e-36 156.4 194 45.4
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 1.8e-35 153.3 269 37.5
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 5.3e-35 151.8 198 41.9
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 1.2e-34 150.6 194 43.3
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 1.2e-34 150.6 224 39.3
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 1.2e-34 150.6 246 37.0
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 2.7e-34 149.4 233 39.1
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 3.5e-34 149.1 223 40.8
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 2.9e-33 146.0 194 42.8
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 8.5e-33 144.4 184 42.9
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 2.7e-31 139.4 242 36.4
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 2.7e-31 139.4 181 43.6
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 1.4e-30 137.1 221 38.0
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 3.0e-30 136.0 194 39.7
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 6.3e-28 128.3 186 41.9
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 1.1e-27 127.5 208 33.2
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 1.4e-27 127.1 202 35.1
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 3.5e-26 122.5 203 34.5
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 3.5e-26 122.5 135 44.4
Ca_24437_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 3.3e-24 115.9 84 67.9
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 2.1e-23 113.2 105 49.5
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 2.0e-21 106.7 84 60.7
Os02g0694201 Oryza sativa ssp. japonica HOM05D004822 ORTHO05D005632 4.4e-21 105.5 89 53.9
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 2.8e-20 102.8 229 30.1
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 6.3e-20 101.7 229 29.7
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 1.1e-19 100.9 89 53.9
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 3.1e-19 99.4 89 57.3
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 7.0e-19 98.2 97 47.4
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 1.0e-17 94.4 81 58.0
CBR_g57081 Chara braunii HOM05D004822 ORTHO05D005632 3.9e-17 92.4 87 51.7
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 5.6e-16 88.6 78 48.7
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 7.3e-16 88.2 176 31.8
vmacro22182 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 4.4e-13 79.0 54 61.1
BcaC05g30339 Brassica carinata HOM05D004822 ORTHO05D005632 1.6e-10 70.5 180 33.3
Ca_24436_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 8.6e-09 64.7 52 53.8
BcaC05g30307 Brassica carinata HOM05D004822 ORTHO05D005632 2.1e-07 60.1 43 53.5
Cre13.g572150 Chlamydomonas reinhardtii HOM05D004822 ORTHO05D005632 2.1e-07 60.1 69 50.7
arahy.Tifrunner.gnm1.ann1.G1LWM7 Arachis hypogaea HOM05D004822 ORTHO05D005632 4.7e-07 58.9 43 58.1
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 2.3e-06 56.6 56 46.4


User provided reference genes

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