Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 2.5e-164 582.0 296 100.0
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 3.0e-112 409.1 295 76.3
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 5.6e-111 404.8 297 76.4
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 8.1e-110 401.0 299 75.9
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 7.6e-92 341.3 301 67.8
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 8.2e-62 241.5 317 49.2
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 4.1e-61 239.2 318 47.2
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.1e-58 231.1 310 48.4
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 1.9e-58 230.3 307 46.9
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 7.2e-58 228.4 317 44.8
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 7.2e-58 228.4 317 44.8
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 1.2e-57 227.6 305 46.2
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 1.8e-56 223.8 311 46.6
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 9.7e-55 218.0 319 44.5
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.5e-52 210.7 312 41.3
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 5.9e-52 208.8 312 42.9
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.3e-51 207.6 306 43.8
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 2.2e-51 206.8 319 44.2
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 8.5e-51 204.9 319 42.9
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.1e-50 204.5 312 43.9
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 1.4e-50 204.1 313 44.1
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 3.6e-49 199.5 308 44.5
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 1.0e-48 198.0 308 43.2
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 2.3e-48 196.8 317 43.2
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 8.8e-48 194.9 308 40.9
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 8.8e-48 194.9 303 42.9
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 9.7e-47 191.4 302 42.4
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 1.3e-46 191.0 305 43.0
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 4.8e-46 189.1 304 41.1
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 8.2e-46 188.3 304 41.4
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.4e-45 187.6 324 41.7
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 1.8e-45 187.2 305 43.3
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.8e-45 187.2 314 40.1
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 5.3e-45 185.7 309 41.4
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 1.2e-44 184.5 301 42.2
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.5e-44 184.1 303 40.9
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 7.7e-44 181.8 309 40.5
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 1.0e-43 181.4 305 40.7
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.9e-43 179.9 268 44.4
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.8e-43 179.5 258 44.6
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 3.8e-43 179.5 319 42.0
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.4e-42 177.6 270 42.2
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 7.2e-42 175.3 305 38.4
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 2.1e-41 173.7 322 40.7
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 2.7e-41 173.3 301 41.2
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 3.6e-41 172.9 309 41.4
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 6.1e-41 172.2 305 38.0
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 6.1e-41 172.2 301 41.2
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 6.1e-41 172.2 306 40.5
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 1.0e-40 171.4 323 41.8
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.0e-40 171.4 310 40.0
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 1.4e-40 171.0 310 39.7
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.8e-40 170.6 311 40.5
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 2.3e-40 170.2 310 38.4
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 3.0e-40 169.9 312 39.1
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.2e-40 169.1 304 39.8
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 5.2e-40 169.1 319 42.0
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 8.8e-40 168.3 307 37.1
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.5e-39 167.5 324 38.6
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 2.6e-39 166.8 305 38.4
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.6e-39 166.8 285 40.4
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 3.3e-39 166.4 308 39.0
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 5.7e-39 165.6 313 37.4
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 1.7e-38 164.1 299 40.1
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 2.2e-38 163.7 303 40.6
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.2e-38 163.7 308 38.3
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 2.8e-38 163.3 310 39.7
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 2.8e-38 163.3 300 38.0
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 3.7e-38 162.9 304 38.8
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 1.1e-37 161.4 306 35.9
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 1.8e-37 160.6 302 39.1
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 3.1e-37 159.8 309 40.5
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 7.0e-37 158.7 305 41.6
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 9.1e-37 158.3 307 37.1
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.0e-36 157.1 321 38.6
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.6e-36 156.8 180 50.6
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 4.5e-36 156.0 319 38.2
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 1.0e-35 154.8 302 37.1
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.3e-35 154.5 298 37.9
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.3e-35 154.5 303 38.6
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 2.2e-35 153.7 315 34.0
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 5.0e-35 152.5 308 36.7
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 5.0e-35 152.5 311 37.9
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 4.7e-33 146.0 304 36.5
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 6.1e-33 145.6 302 37.7
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 6.1e-33 145.6 283 40.3
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 8.0e-33 145.2 301 35.9
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 4.0e-32 142.9 311 35.4
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.8e-32 141.7 303 38.3
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 1.3e-30 137.9 309 32.7
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 2.2e-30 137.1 318 34.3
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 3.7e-30 136.3 307 35.5
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 4.8e-30 136.0 267 36.7
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 6.3e-30 135.6 294 35.0
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 2.4e-29 133.7 236 38.1
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.1e-29 132.9 311 35.0
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.0e-29 132.1 318 34.0
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.0e-29 132.1 318 34.0
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.0e-29 132.1 318 33.3
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 2.7e-28 130.2 328 34.5
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 2.7e-28 130.2 240 39.2
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.0e-27 128.3 297 33.7
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.0e-27 128.3 297 35.0
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 3.2e-26 123.2 306 34.3
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 3.2e-26 123.2 317 35.0
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 7.2e-26 122.1 179 42.5
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 9.4e-26 121.7 312 32.4
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 9.4e-26 121.7 313 31.6
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.2e-25 121.3 324 34.6
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.1e-25 120.6 305 32.1
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 3.6e-25 119.8 297 34.0
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 4.7e-25 119.4 297 34.0
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 1.0e-24 118.2 311 33.1
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.0e-24 118.2 297 33.3
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.4e-24 117.9 291 33.7
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 1.4e-24 117.9 299 30.8
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.8e-24 117.5 295 33.9
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 3.0e-24 116.7 328 33.2
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 3.0e-24 116.7 317 33.1
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 4.0e-24 116.3 317 31.9
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 5.2e-24 115.9 303 36.3
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 8.8e-24 115.2 307 31.6
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 1.2e-23 114.8 317 34.1
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 2.0e-23 114.0 296 32.4
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.0e-23 114.0 311 33.1
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 3.4e-23 113.2 310 34.5
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 4.4e-23 112.8 321 32.7
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.4e-23 112.8 309 31.1
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 5.7e-23 112.5 326 31.6
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 5.7e-23 112.5 317 32.2
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 7.5e-23 112.1 315 32.4
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 7.5e-23 112.1 312 32.7
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 7.5e-23 112.1 298 30.9
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 9.8e-23 111.7 305 32.5
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.7e-22 110.9 317 31.9
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.7e-22 110.9 311 33.8
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 1.7e-22 110.9 209 34.4
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 2.2e-22 110.5 307 31.9
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 2.2e-22 110.5 307 31.9
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 2.2e-22 110.5 248 36.7
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 2.2e-22 110.5 322 32.3
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 2.8e-22 110.2 308 32.5
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 2.8e-22 110.2 309 33.0
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.8e-22 110.2 297 32.0
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 3.7e-22 109.8 309 33.0
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.4e-21 107.1 324 32.7
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.1e-21 106.7 182 38.5
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 5.4e-21 105.9 319 32.0
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 7.0e-21 105.5 319 32.0
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 7.0e-21 105.5 319 32.0
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 7.0e-21 105.5 304 33.2
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 7.0e-21 105.5 319 32.0
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.2e-20 104.8 301 32.2
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.6e-20 104.4 311 31.5
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.6e-20 104.4 311 32.8
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 1.6e-20 104.4 303 32.7
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 2.0e-20 104.0 308 33.1
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 2.7e-20 103.6 309 31.7
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 2.7e-20 103.6 313 32.3
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.7e-20 103.6 293 32.1
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.5e-18 97.8 322 32.6
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 2.5e-18 97.1 230 33.0
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 9.5e-18 95.1 227 32.2
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 2.1e-17 94.0 185 38.4
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 4.7e-17 92.8 253 33.2
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 8.0e-17 92.0 92 51.1
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.8e-16 90.9 137 41.6
TAR633G2325 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.8e-16 89.0 159 41.5
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 5.7e-15 85.9 314 29.3
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 6.3e-14 82.4 140 35.0
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.4e-13 80.5 305 29.5
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 2.4e-13 80.5 282 31.6
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 5.4e-13 79.3 113 42.5
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 7.0e-13 79.0 88 51.1
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 7.8e-12 75.5 155 35.5
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.9e-11 73.6 286 29.4
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.1e-10 71.6 89 42.7
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 4.3e-10 69.7 118 39.0
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 5.6e-10 69.3 88 43.2
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.0e-08 65.1 68 45.6
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 1.2e-07 61.6 135 32.6
CDE02G1486 Ceratophyllum demersum HOM05D002360 ORTHO05D006297 3.4e-07 60.1 153 29.4
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.3e-06 58.2 300 26.0
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 8.3e-06 55.5 101 35.6


User provided reference genes

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