Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 8.4e-61 237.3 161 100.0
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.7e-37 159.8 164 74.4
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 2.4e-23 112.8 150 59.3
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.8e-21 105.5 152 51.3
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 8.5e-21 104.4 158 60.8
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 7.2e-20 101.3 169 59.8
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.2e-19 100.5 165 55.8
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 2.1e-19 99.8 169 50.9
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 2.7e-19 99.4 164 47.0
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.7e-19 99.4 153 47.7
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.0e-18 97.4 159 64.8
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.4e-18 97.1 166 55.4
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 1.8e-18 96.7 148 63.5
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 2.3e-18 96.3 150 48.0
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 2.3e-18 96.3 150 42.7
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 3.0e-18 95.9 163 50.3
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 3.0e-18 95.9 170 55.9
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 3.9e-18 95.5 174 55.7
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 6.7e-18 94.7 156 55.1
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.1e-17 94.0 152 46.1
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.1e-17 94.0 157 40.1
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.5e-17 93.6 150 42.7
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.5e-17 93.6 169 59.2
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.5e-17 93.6 145 35.2
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.6e-17 92.8 136 63.2
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 3.3e-17 92.4 163 55.2
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 3.3e-17 92.4 164 47.6
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 3.3e-17 92.4 156 46.2
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 3.3e-17 92.4 156 46.2
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 3.3e-17 92.4 129 52.7
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 5.7e-17 91.7 172 47.1
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 5.7e-17 91.7 156 49.4
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 5.7e-17 91.7 146 47.3
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 7.4e-17 91.3 163 46.6
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 9.7e-17 90.9 158 49.4
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 9.7e-17 90.9 164 40.9
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.3e-16 90.5 163 49.1
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.3e-16 90.5 163 49.1
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 2.2e-16 89.7 140 56.4
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 2.8e-16 89.4 163 53.4
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 2.8e-16 89.4 152 53.9
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 3.7e-16 89.0 138 62.3
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 3.7e-16 89.0 172 54.7
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 6.3e-16 88.2 153 47.7
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 6.3e-16 88.2 147 54.4
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 6.3e-16 88.2 148 58.1
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.2e-16 87.8 147 54.4
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 8.2e-16 87.8 129 61.2
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.4e-15 87.0 152 54.6
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 1.8e-15 86.7 162 56.2
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.8e-15 86.7 161 52.2
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.8e-15 86.7 147 52.4
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.8e-15 86.7 130 48.5
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.4e-15 86.3 172 49.4
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 2.4e-15 86.3 128 55.5
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 3.1e-15 85.9 147 57.1
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.1e-15 85.5 155 52.9
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 4.1e-15 85.5 158 38.0
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 9.1e-15 84.3 161 50.9
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.2e-14 84.0 159 35.8
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.5e-14 83.6 162 52.5
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 1.5e-14 83.6 163 50.9
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.0e-14 83.2 168 51.2
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 2.0e-14 83.2 158 38.0
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 4.5e-14 82.0 151 44.4
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 5.9e-14 81.6 139 60.4
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 7.7e-14 81.3 129 48.8
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.3e-13 80.5 152 47.4
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 2.2e-13 79.7 125 46.4
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 2.9e-13 79.3 149 55.0
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 5.0e-13 78.6 129 45.0
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 5.0e-13 78.6 56 53.6
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 1.1e-12 77.4 123 60.2
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 1.9e-12 76.6 137 48.2
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.9e-12 76.6 148 48.6
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 5.5e-12 75.1 126 47.6
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 5.5e-12 75.1 148 43.2
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 7.2e-12 74.7 152 46.1
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 7.2e-12 74.7 148 39.9
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 9.4e-12 74.3 165 51.5
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 9.4e-12 74.3 150 47.3
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.2e-11 73.9 129 50.4
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.2e-11 73.9 129 50.4
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.2e-11 73.9 129 50.4
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.2e-11 73.9 129 50.4
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.6e-11 73.6 129 59.7
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 2.1e-11 73.2 188 47.3
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.1e-11 73.2 54 53.7
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 2.7e-11 72.8 55 50.9
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.7e-11 72.8 121 47.1
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.7e-11 72.0 138 40.6
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 4.7e-11 72.0 56 50.0
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 6.1e-11 71.6 53 49.1
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 6.1e-11 71.6 53 49.1
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 6.1e-11 71.6 53 49.1
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 6.1e-11 71.6 53 49.1
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 6.1e-11 71.6 53 49.1
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 6.1e-11 71.6 194 43.3
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 8.0e-11 71.2 121 55.4
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 8.0e-11 71.2 176 47.2
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 1.4e-10 70.5 53 47.2
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 1.4e-10 70.5 53 47.2
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 1.4e-10 70.5 53 47.2
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 1.4e-10 70.5 53 47.2
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 1.8e-10 70.1 154 39.6
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 2.3e-10 69.7 132 50.0
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 3.0e-10 69.3 56 50.0
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.0e-10 69.3 53 52.8
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 3.9e-10 68.9 57 45.6
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.9e-10 68.9 58 48.3
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.9e-10 68.9 142 43.7
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 5.2e-10 68.6 55 49.1
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 6.7e-10 68.2 53 45.3
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 6.7e-10 68.2 53 45.3
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 6.7e-10 68.2 53 45.3
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 6.7e-10 68.2 53 45.3
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 8.8e-10 67.8 53 47.2
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 8.8e-10 67.8 53 47.2
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 8.8e-10 67.8 138 34.1
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 8.8e-10 67.8 137 35.8
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.1e-09 67.4 126 42.1
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 2.0e-09 66.6 130 51.5
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 3.3e-09 65.9 58 46.6
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.4e-09 65.5 156 44.2
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 5.7e-09 65.1 130 30.8
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 9.7e-09 64.3 49 49.0
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.7e-08 63.5 128 47.7
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 2.8e-08 62.8 48 47.9
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.8e-08 62.0 48 47.9
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 4.8e-08 62.0 51 45.1
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 4.8e-08 62.0 51 45.1
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 4.8e-08 62.0 51 47.1
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.3e-08 61.6 135 31.9
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.2e-08 61.2 48 45.8
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 8.2e-08 61.2 52 50.0
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 8.2e-08 61.2 49 46.9
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 8.2e-08 61.2 156 52.6
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 8.2e-08 61.2 54 42.6
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 8.2e-08 61.2 51 45.1
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.4e-07 60.5 140 37.9
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.4e-07 60.5 140 37.9
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.8e-07 60.1 48 47.9
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.8e-07 60.1 48 47.9
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.4e-07 59.7 51 43.1
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.1e-07 58.9 137 54.0
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.1e-07 58.9 134 47.8
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 5.3e-07 58.5 129 30.2
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 9.1e-07 57.8 54 38.9
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.6e-06 57.0 51 39.2


User provided reference genes

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