Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 6.3e-117 424.1 211 100.0
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.6e-40 170.2 285 42.8
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.6e-40 170.2 285 42.8
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 3.7e-40 169.1 285 42.5
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.7e-37 160.2 285 41.8
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 2.2e-37 159.8 285 41.8
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.4e-30 136.0 285 37.9
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.7e-29 133.7 286 37.4
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.7e-29 133.7 286 38.1
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.1e-28 131.0 261 37.5
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 1.4e-28 130.6 287 37.3
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.4e-28 130.6 287 37.3
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.9e-28 130.2 156 49.4
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.5e-28 129.8 156 48.7
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 3.2e-28 129.4 285 35.1
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 4.2e-28 129.0 272 37.5
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 5.5e-28 128.6 288 36.5
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 5.5e-28 128.6 285 35.8
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 7.2e-28 128.3 156 50.0
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.2e-27 127.5 287 35.9
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 2.7e-27 126.3 178 45.5
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 3.6e-27 125.9 288 36.5
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 3.6e-27 125.9 287 36.2
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 6.1e-27 125.2 156 47.4
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 6.1e-27 125.2 285 35.8
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 7.9e-27 124.8 157 48.4
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 7.9e-27 124.8 285 36.1
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 1.8e-26 123.6 156 46.8
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.8e-26 123.6 277 35.0
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.8e-26 123.6 287 35.5
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 2.3e-26 123.2 292 35.6
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 2.3e-26 123.2 286 34.6
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 3.9e-26 122.5 286 34.3
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 5.1e-26 122.1 275 33.1
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 6.7e-26 121.7 156 47.4
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 6.7e-26 121.7 286 35.3
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 8.8e-26 121.3 286 36.7
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.5e-25 120.6 156 46.8
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.5e-25 120.6 157 47.8
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 2.6e-25 119.8 156 46.8
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.3e-25 119.4 286 35.0
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.3e-25 119.4 286 35.0
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.4e-25 119.0 285 34.7
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.4e-25 119.0 157 47.1
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.4e-25 119.0 267 35.2
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 4.4e-25 119.0 267 35.2
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 5.7e-25 118.6 164 47.0
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.3e-24 117.5 164 44.5
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.3e-24 117.5 286 34.3
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.3e-24 117.5 157 45.2
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.3e-24 117.5 286 34.3
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 2.2e-24 116.7 285 34.4
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.2e-24 116.7 288 35.4
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.8e-24 116.3 158 48.1
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.8e-24 116.3 164 46.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 3.7e-24 115.9 181 43.6
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 3.7e-24 115.9 157 45.9
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 3.7e-24 115.9 157 46.5
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 8.2e-24 114.8 244 36.9
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 8.2e-24 114.8 288 34.0
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 1.4e-23 114.0 295 35.3
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 1.8e-23 113.6 281 34.5
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.8e-23 113.6 286 33.6
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 3.1e-23 112.8 288 35.1
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.1e-23 112.8 162 42.6
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 3.1e-23 112.8 153 49.0
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 4.1e-23 112.5 157 47.1
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 5.3e-23 112.1 288 35.1
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 5.3e-23 112.1 285 34.0
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 5.3e-23 112.1 285 35.1
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 7.0e-23 111.7 157 45.2
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.2e-22 110.9 152 46.1
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 1.5e-22 110.5 153 48.4
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.0e-22 110.2 158 45.6
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 2.0e-22 110.2 286 34.3
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 3.5e-22 109.4 158 42.4
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 3.5e-22 109.4 156 44.9
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 4.5e-22 109.0 287 34.1
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 5.9e-22 108.6 153 46.4
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.3e-21 107.5 291 33.3
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 1.7e-21 107.1 288 34.4
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.2e-21 106.7 156 42.3
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 6.5e-21 105.1 159 45.9
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 6.5e-21 105.1 285 32.6
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 6.5e-21 105.1 156 42.9
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 8.5e-21 104.8 289 32.9
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 8.5e-21 104.8 277 34.3
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 1.5e-20 104.0 173 42.2
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.5e-20 104.0 153 41.8
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 1.9e-20 103.6 159 44.7
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.9e-20 103.6 175 41.7
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 1.9e-20 103.6 158 43.7
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 2.5e-20 103.2 157 43.9
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 2.5e-20 103.2 153 41.8
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 4.2e-20 102.4 163 41.7
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 4.2e-20 102.4 293 34.1
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 7.2e-20 101.7 166 42.8
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 1.2e-19 100.9 156 42.3
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 2.7e-19 99.8 284 32.7
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 2.7e-19 99.8 284 32.7
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 3.6e-19 99.4 285 33.3
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 3.6e-19 99.4 288 32.6
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 3.6e-19 99.4 288 32.6
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 3.6e-19 99.4 280 33.6
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 3.6e-19 99.4 219 36.5
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 8.0e-19 98.2 279 33.0
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 1.0e-18 97.8 154 40.3
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 1.8e-18 97.1 288 33.0
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.8e-18 97.1 158 43.7
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 1.8e-18 97.1 284 31.7
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 3.0e-18 96.3 222 36.0
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 4.0e-18 95.9 288 33.7
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 5.2e-18 95.5 220 35.5
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 5.2e-18 95.5 286 32.5
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 6.7e-18 95.1 156 37.8
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 8.8e-18 94.7 220 35.0
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 8.8e-18 94.7 171 39.2
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.1e-17 94.4 156 42.9
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 2.0e-17 93.6 154 39.0
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 2.0e-17 93.6 154 40.9
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 3.3e-17 92.8 157 38.2
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 4.4e-17 92.4 281 31.0
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 5.7e-17 92.0 104 51.9
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 2.2e-16 90.1 118 43.2
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.7e-16 89.4 218 33.9
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 6.3e-16 88.6 90 52.2
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 6.3e-16 88.6 148 38.5
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 8.2e-16 88.2 158 36.1
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 3.1e-15 86.3 139 41.0
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 3.1e-15 86.3 90 51.1
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 4.1e-15 85.9 90 48.9
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.6e-14 84.0 90 48.9
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 2.0e-14 83.6 149 39.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 4.5e-14 82.4 90 47.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 1.0e-13 81.3 112 44.6
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 1.0e-13 81.3 91 47.3
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 1.3e-13 80.9 109 47.7
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 5.0e-13 79.0 262 32.8
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 5.0e-13 79.0 262 31.7
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.1e-12 77.8 90 45.6
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 4.2e-12 75.9 156 38.5
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 9.4e-12 74.7 90 43.3
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 4.7e-11 72.4 80 46.2
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 8.8e-10 68.2 51 68.6
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 6.3e-08 62.0 93 37.6
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 1.8e-07 60.5 86 40.7
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 2.0e-06 57.0 186 31.7
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 4.5e-06 55.8 91 33.0


User provided reference genes

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