Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002042 Sechium edule HOM05D007745 ORTHO05D009771 1.0e-128 463.4 226 100.0
Sed0005896 Sechium edule HOM05D007745 ORTHO05D009771 3.7e-91 338.6 193 81.3
Sed0012259 Sechium edule HOM05D007745 ORTHO05D009771 1.3e-59 233.8 189 65.1
MELO3C010923.2 Cucumis melo HOM05D007745 ORTHO05D009771 2.5e-47 193.0 182 53.8
ClCG08G015320 Citrullus lanatus HOM05D007745 ORTHO05D009771 1.3e-46 190.7 190 56.8
Sed0003155 Sechium edule HOM05D007745 ORTHO05D009771 1.0e-35 154.5 166 45.8
CsaV3_2G028480 Cucumis sativus L. HOM05D007745 ORTHO05D009771 5.5e-34 148.7 142 53.5
Manes.05G163200 Manihot esculenta HOM05D007745 ORTHO05D009771 6.3e-30 135.2 192 39.1
Potri.014G041300 Populus trichocarpa HOM05D007745 ORTHO05D009771 2.0e-28 130.2 187 34.8
Prupe.1G383200 Prunus persica HOM05D007745 ORTHO05D009771 2.0e-28 130.2 194 34.5
CANSAT25G3090 Cannabis sativa HOM05D007745 ORTHO05D009771 8.5e-27 124.8 183 35.0
Haze_17626 Corylus avellana HOM05D007745 ORTHO05D009771 4.2e-26 122.5 187 37.4
Dinv39385 Davidia involucrata HOM05D000626 ORTHO05D000824 1.4e-24 117.5 192 36.5
RcHm_v2.0_Chr6g0300521 Rosa chinensis HOM05D007745 ORTHO05D009771 2.3e-24 116.7 198 35.9
Cfa018439 Carpinus fangiana HOM05D007745 ORTHO05D009771 4.4e-23 112.5 158 40.5
Hma1.2p1_0203F.1_g086690 Hydrangea macrophylla HOM05D007745 ORTHO05D009771 4.8e-22 109.0 134 38.1
Lj4A44T41 Lonicera japonica HOM05D007745 ORTHO05D009771 8.2e-22 108.2 184 33.2
Duzib041G0319 Durio zibethinus HOM05D007745 ORTHO05D009771 1.1e-21 107.8 155 35.5
FAN15G0796 Fragaria x ananassa HOM05D007745 ORTHO05D009771 1.1e-21 107.8 133 39.8
Dinv36046 Davidia involucrata HOM05D007745 ORTHO05D009771 1.4e-21 107.5 181 33.1
Ciclev10001389m.g Citrus clementina HOM05D007745 ORTHO05D009771 3.1e-21 106.3 167 34.7
MD15G1032200 Malus domestica HOM05D007745 ORTHO05D009771 5.3e-21 105.5 193 32.6
FAN20G1509 Fragaria x ananassa HOM05D007745 ORTHO05D009771 9.1e-21 104.8 124 39.5
Sabra14G0030100 Salix brachista HOM05D007745 ORTHO05D009771 5.9e-20 102.1 143 36.4
FvH4_2g40240 Fragaria vesca HOM05D007745 ORTHO05D009771 1.0e-19 101.3 193 33.2
FAN27G0058 Fragaria x ananassa HOM05D007745 ORTHO05D009771 1.0e-19 101.3 124 37.9
MSTRG.24305 Avicennia marina HOM05D007745 ORTHO05D009771 3.8e-19 99.4 183 31.7
GSVIVG01009651001 Vitis vinifera HOM05D007745 ORTHO05D009771 2.5e-18 96.7 172 33.7
Oeu015593.1 Olea europaea HOM05D007745 ORTHO05D009771 4.2e-18 95.9 177 31.1
CiPaw.15G073300 Carya illinoinensis HOM05D007745 ORTHO05D009771 5.5e-18 95.5 187 32.6
MSTRG.22294 Avicennia marina HOM05D007745 ORTHO05D009771 9.4e-18 94.7 140 32.9
Duzib093G2234 Durio zibethinus HOM05D007745 ORTHO05D009771 2.7e-17 93.2 130 35.4
Sc02g0006490 Simmondsia chinensis HOM05D007745 ORTHO05D009771 4.7e-17 92.4 135 37.0
QL02p007506 Quercus lobata HOM05D007745 ORTHO05D009771 8.0e-17 91.7 159 32.7
TAR628G0088 Trochodendron aralioides HOM05D007745 ORTHO05D009771 1.4e-16 90.9 134 38.8
HanXRQChr04g0104881 Helianthus annuus HOM05D007745 ORTHO05D009771 1.8e-16 90.5 128 35.9
vmacro21613 Vaccinium macrocarpon HOM05D007745 ORTHO05D009771 1.8e-16 90.5 125 39.2
Eucgr.A00494 Eucalyptus grandis HOM05D007745 ORTHO05D009771 3.0e-16 89.7 184 28.3
Nn1g05100 Nelumbo nucifera HOM05D000010 ORTHO05D009771 4.0e-16 89.4 141 36.2
MBI16_g33266_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 6.8e-16 88.6 140 35.7
Cpa.g.sc64.53 Carica papaya HOM05D007745 ORTHO05D009771 8.8e-16 88.2 199 29.1
DCAR_012752 Daucus carota HOM05D007745 ORTHO05D009771 1.2e-15 87.8 125 35.2
Eucgr.F01538 Eucalyptus grandis HOM05D007745 ORTHO05D009771 1.2e-15 87.8 135 34.1
Eucgr.F01535 Eucalyptus grandis HOM05D007745 ORTHO05D009771 2.0e-15 87.0 110 42.7
Gohir.A05G196400 Gossypium hirsutum HOM05D007745 ORTHO05D009771 2.0e-15 87.0 129 34.9
SGA_v2.0_scaffold14G07060 Striga asiatica HOM05D007745 ORTHO05D009771 2.0e-15 87.0 160 32.5
SalBow8G3493 Salvia bowleyana HOM05D007745 ORTHO05D009771 2.6e-15 86.7 122 35.2
SalBow8G4556 Salvia bowleyana HOM05D007745 ORTHO05D009771 2.6e-15 86.7 122 35.2
Eucgr.F01536 Eucalyptus grandis HOM05D007745 ORTHO05D009771 3.4e-15 86.3 106 39.6
Gohir.D05G199500 Gossypium hirsutum HOM05D007745 ORTHO05D009771 3.4e-15 86.3 129 34.9
Nn5g29499 Nelumbo nucifera HOM05D007745 ORTHO05D009771 3.4e-15 86.3 150 33.3
Gorai.009G204700 Gossypium raimondii HOM05D007745 ORTHO05D009771 5.7e-15 85.5 129 34.1
HanXRQChr09g0268481 Helianthus annuus HOM05D007745 ORTHO05D009771 5.7e-15 85.5 138 31.9
Rhsim06G0036400 Rhododendron simsii HOM05D007745 ORTHO05D009771 5.7e-15 85.5 189 29.1
ECA232G0976 Erigeron canadensis HOM05D007745 ORTHO05D009771 1.3e-14 84.3 133 33.1
MBI16_g27546_MAGBIO Magnolia biondii HOM05D007745 ORTHO05D009771 1.3e-14 84.3 129 35.7
CSS0036766 Camellia sinensis var. sinensis HOM05D007745 ORTHO05D009771 1.7e-14 84.0 126 33.3
Gohir.A06G011800 Gossypium hirsutum HOM05D007745 ORTHO05D009771 1.7e-14 84.0 186 30.1
HanXRQChr04g0104891 Helianthus annuus HOM05D007745 ORTHO05D009771 1.7e-14 84.0 128 34.4
Nitab4.5_0000110g0250 Nicotiana tabacum HOM05D007745 ORTHO05D009771 1.7e-14 84.0 198 30.3
HPP92_020403 Vanilla planifolia HOM05D007745 ORTHO05D009771 1.7e-14 84.0 150 31.3
Eucgr.F01537 Eucalyptus grandis HOM05D007745 ORTHO05D009771 3.7e-14 82.8 107 39.3
Thecc.08G022500 Theobroma cacao HOM05D007745 ORTHO05D009771 6.3e-14 82.0 141 33.3
Eucgr.F01539 Eucalyptus grandis HOM05D007745 ORTHO05D009771 8.3e-14 81.6 125 35.2
Migut.N00516 Erythranthe guttata HOM05D007745 ORTHO05D009771 1.8e-13 80.5 148 30.4
Gohir.D06G009200 Gossypium hirsutum HOM05D007745 ORTHO05D009771 2.4e-13 80.1 186 30.1
CAN.G1126.17 Capsicum annuum HOM05D007745 ORTHO05D009771 3.1e-13 79.7 124 33.9
Lsat_1_v5_gn_1_18141 Lactuca sativa HOM05D007745 ORTHO05D009771 4.1e-13 79.3 134 35.8
Nitab4.5_0010511g0010 Nicotiana tabacum HOM05D007745 ORTHO05D009771 4.1e-13 79.3 198 29.3
Peaxi162Scf00057g00084 Petunia axillaris HOM05D007745 ORTHO05D009771 9.1e-13 78.2 130 33.1
Lsat_1_v5_gn_4_122120 Lactuca sativa HOM05D007745 ORTHO05D009771 2.7e-12 76.6 112 37.5
CiPaw.16G054300 Carya illinoinensis HOM05D007745 ORTHO05D009771 4.5e-12 75.9 124 33.1
CAN.G1126.15 Capsicum annuum HOM05D007745 ORTHO05D009771 1.7e-11 73.9 124 32.3
Solyc04g079940.3 Solanum lycopersicum HOM05D007745 ORTHO05D009771 2.9e-11 73.2 135 31.9
PSO541G3078 Papaver somniferum HOM05D007745 ORTHO05D009771 5.0e-11 72.4 118 32.2
Cc10_g03330 Coffea canephora HOM05D007745 ORTHO05D009771 8.5e-11 71.6 123 33.3
PSO675G1126 Papaver somniferum HOM05D007745 ORTHO05D009771 1.1e-10 71.2 118 32.2
Sopen04g033520 Solanum pennellii HOM05D007745 ORTHO05D009771 5.5e-10 68.9 190 25.8
HanXRQChr16g0508531 Helianthus annuus HOM05D007745 ORTHO05D009771 2.7e-09 66.6 109 33.9
Prupe.1G390000 Prunus persica HOM05D007745 ORTHO05D009771 4.7e-09 65.9 68 39.7
Hund22203 Selenicereus undatus HOM05D000010 ORTHO05D000063 4.7e-09 65.9 150 28.7
AUR62037478 Chenopodium quinoa HOM05D000010 ORTHO05D000063 4.0e-08 62.8 140 28.6
ECA246G4093 Erigeron canadensis HOM05D000383 ORTHO05D003501 8.8e-08 61.6 132 32.6
Medtr3g093040 Medicago truncatula HOM05D000010 ORTHO05D000063 1.2e-07 61.2 79 38.0
RcHm_v2.0_Chr3g0481481 Rosa chinensis HOM05D000010 ORTHO05D000151 1.5e-07 60.8 153 27.5
SalBow5G1948 Salvia bowleyana HOM05D000010 ORTHO05D003912 2.0e-07 60.5 130 33.8
Aa31LG10G10 Aethionema arabicum HOM05D000010 ORTHO05D000063 2.6e-07 60.1 155 28.4
Hund06871 Selenicereus undatus HOM05D000010 ORTHO05D000063 2.6e-07 60.1 222 25.2
Duzib068G0323 Durio zibethinus HOM05D000010 ORTHO05D000063 3.4e-07 59.7 94 33.0
Potri.010G166200 Populus trichocarpa HOM05D000010 ORTHO05D000151 3.4e-07 59.7 139 28.8
SalBow5G0396 Salvia bowleyana HOM05D000010 ORTHO05D003912 3.4e-07 59.7 130 33.8
EL10Ac5g12170 Beta vulgaris HOM05D000010 ORTHO05D000063 4.4e-07 59.3 97 36.1
Glyma.06G166500 Glycine max HOM05D000010 ORTHO05D001550 4.4e-07 59.3 89 34.8
Lsat_1_v5_gn_9_42720 Lactuca sativa HOM05D000010 ORTHO05D004316 4.4e-07 59.3 78 39.7
Hund28333 Selenicereus undatus HOM05D000010 ORTHO05D003912 4.4e-07 59.3 133 33.8
Hma1.2p1_0378F.1_g139690 Hydrangea macrophylla HOM05D000010 ORTHO05D000063 5.7e-07 58.9 113 29.2
QL03p011486 Quercus lobata HOM05D000010 ORTHO05D000063 5.7e-07 58.9 151 23.8
DCAR_006295 Daucus carota HOM05D000010 ORTHO05D003912 7.5e-07 58.5 121 35.5
SalBow1G8485 Salvia bowleyana HOM05D000010 ORTHO05D003912 7.5e-07 58.5 83 38.6
CiPaw.06G039200 Carya illinoinensis HOM05D000010 ORTHO05D000063 9.8e-07 58.2 74 36.5
MD14G1150900 Malus domestica HOM05D000010 ORTHO05D001550 9.8e-07 58.2 117 30.8
Aqoxy3G02458 Aquilegia oxysepala HOM05D000010 ORTHO05D000063 1.3e-06 57.8 140 30.7
AUR62018752 Chenopodium quinoa HOM05D000010 ORTHO05D000063 1.3e-06 57.8 129 32.6
Glyma.11G212400 Glycine max HOM05D000010 ORTHO05D000063 1.3e-06 57.8 79 36.7
Gorai.006G203800 Gossypium raimondii HOM05D000010 ORTHO05D000063 1.3e-06 57.8 83 33.7
Hma1.2p1_0217F.1_g091610 Hydrangea macrophylla HOM05D000010 ORTHO05D003408 1.3e-06 57.8 120 26.7
Lalb_Chr01g0000181 Lupinus albus HOM05D000010 ORTHO05D000063 1.3e-06 57.8 74 33.8
Oeu028614.1 Olea europaea HOM05D000010 ORTHO05D000063 1.3e-06 57.8 113 28.3
QL09p006487 Quercus lobata HOM05D000010 ORTHO05D000063 1.3e-06 57.8 79 34.2
Hund00340 Selenicereus undatus HOM05D000010 ORTHO05D003912 1.3e-06 57.8 182 29.7
DCAR_015676 Daucus carota HOM05D000010 ORTHO05D003912 1.7e-06 57.4 148 30.4
Lalb_Chr17g0344831 Lupinus albus HOM05D000010 ORTHO05D000063 1.7e-06 57.4 79 35.4
Medtr4g094302 Medicago truncatula HOM05D000010 ORTHO05D003408 1.7e-06 57.4 122 27.9
Phvul.009G163200 Phaseolus vulgaris HOM05D000010 ORTHO05D001550 1.7e-06 57.4 84 36.9
TAR622G0941 Trochodendron aralioides HOM05D000010 ORTHO05D000151 1.7e-06 57.4 155 27.1
Actinidia01535 Actinidia chinensis HOM05D000010 ORTHO05D000063 2.2e-06 57.0 74 37.8
EL10Ac9g21279 Beta vulgaris HOM05D000010 ORTHO05D003912 2.2e-06 57.0 133 33.1
AUR62017681 Chenopodium quinoa HOM05D000010 ORTHO05D000063 2.2e-06 57.0 125 29.6
Haze_10015 Corylus avellana HOM05D000010 ORTHO05D002559 2.2e-06 57.0 84 35.7
Gohir.A09G186966 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.2e-06 57.0 83 33.7
Gohir.D09G181800 Gossypium hirsutum HOM05D000010 ORTHO05D000063 2.2e-06 57.0 83 33.7
Rhsim09G0210500 Rhododendron simsii HOM05D000010 ORTHO05D000063 2.2e-06 57.0 184 26.1
TAR628G1515 Trochodendron aralioides HOM05D000010 ORTHO05D000063 2.2e-06 57.0 217 24.9
vmacro19151 Vaccinium macrocarpon HOM05D000010 ORTHO05D001550 2.2e-06 57.0 149 28.2
VMungo0540G0207 Vigna mungo HOM05D000010 ORTHO05D000063 2.2e-06 57.0 79 36.7
A03p28960 Brassica napus HOM05D000010 ORTHO05D000063 2.8e-06 56.6 81 32.1
C03p35000 Brassica napus HOM05D000010 ORTHO05D000063 2.8e-06 56.6 81 32.1
BraA03t12094Z Brassica rapa HOM05D000010 ORTHO05D000063 2.8e-06 56.6 81 32.1
CSS0019384 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000063 2.8e-06 56.6 80 38.8
CiPaw.04G007100 Carya illinoinensis HOM05D000010 ORTHO05D000063 2.8e-06 56.6 74 36.5
Oeu006128.2 Olea europaea HOM05D000010 ORTHO05D003912 2.8e-06 56.6 121 33.1
Phvul.006G087000 Phaseolus vulgaris HOM05D000010 ORTHO05D000063 2.8e-06 56.6 79 36.7
RcHm_v2.0_Chr7g0189281 Rosa chinensis HOM05D000010 ORTHO05D001550 2.8e-06 56.6 99 36.4
Ca_18333_v3 Cicer arietinum L. HOM05D000010 ORTHO05D003408 3.7e-06 56.2 122 27.0
Glyma.18G043900 Glycine max HOM05D000010 ORTHO05D000063 3.7e-06 56.2 78 35.9
Lsat_1_v5_gn_6_64840 Lactuca sativa HOM05D000010 ORTHO05D000063 3.7e-06 56.2 176 26.7
Zm00001eb390560 Zea mays HOM05D000010 ORTHO05D000063 3.7e-06 56.2 78 35.9
Ah.12g054600 Amaranthus hybridus HOM05D000010 ORTHO05D000063 4.9e-06 55.8 128 30.5
ATR0579G041 Amborella trichopoda HOM05D000010 ORTHO05D000063 4.9e-06 55.8 140 29.3
CARHR084990 Cardamine hirsuta HOM05D000010 ORTHO05D000063 4.9e-06 55.8 80 35.0
CARHR085000 Cardamine hirsuta HOM05D000010 ORTHO05D000063 4.9e-06 55.8 80 35.0
Ciclev10033790m.g Citrus clementina HOM05D000010 ORTHO05D010961 4.9e-06 55.8 119 28.6
FvH4_6g23460 Fragaria vesca HOM05D000010 ORTHO05D000151 4.9e-06 55.8 231 26.0
HanXRQChr16g0512551 Helianthus annuus HOM05D000010 ORTHO05D000063 4.9e-06 55.8 133 30.8
Psat6g171320 Pisum sativum HOM05D000010 ORTHO05D000063 4.9e-06 55.8 84 34.5
Sed0012401 Sechium edule HOM05D000010 ORTHO05D000063 4.9e-06 55.8 153 26.8
SGA_v2.0_scaffold10G05500 Striga asiatica HOM05D000010 ORTHO05D000063 4.9e-06 55.8 74 36.5
SGA_v2.0_scaffold207G41949 Striga asiatica HOM05D000010 ORTHO05D003912 4.9e-06 55.8 106 33.0
THA.LOC104827746 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 4.9e-06 55.8 160 25.6
MSTRG.19954 Avicennia marina HOM05D000010 ORTHO05D003912 6.3e-06 55.5 121 33.1
BcaC01g04679 Brassica carinata HOM05D000010 ORTHO05D000063 6.3e-06 55.5 81 32.1
Ca_10448_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000063 6.3e-06 55.5 84 35.7
Ca_11240_v3 Cicer arietinum L. HOM05D000010 ORTHO05D003912 6.3e-06 55.5 121 35.5
Lalb_Chr19g0139581 Lupinus albus HOM05D000010 ORTHO05D003912 6.3e-06 55.5 80 40.0
Oeu030001.1 Olea europaea HOM05D000059 ORTHO05D000128 6.3e-06 55.5 105 34.3
Oeu030002.1 Olea europaea HOM05D000010 ORTHO05D000063 6.3e-06 55.5 105 34.3
Os10g0359500 Oryza sativa ssp. japonica HOM05D052549 ORTHO05D000063 6.3e-06 55.5 137 29.2
GSVIVG01023921001 Vitis vinifera HOM05D000010 ORTHO05D003912 6.3e-06 55.5 83 42.2
Atru.chr5.3491 Acer truncatum HOM05D000010 ORTHO05D003912 8.3e-06 55.1 80 38.8
arahy.Tifrunner.gnm1.ann1.RC5QY0 Arachis hypogaea HOM05D000010 ORTHO05D003408 8.3e-06 55.1 122 27.0
MSTRG.5465 Avicennia marina HOM05D000010 ORTHO05D003912 8.3e-06 55.1 180 28.3
BcaB04g18596 Brassica carinata HOM05D000010 ORTHO05D000063 8.3e-06 55.1 83 37.3
BcaC01g04179 Brassica carinata HOM05D000010 ORTHO05D000063 8.3e-06 55.1 83 37.3
A03p36590 Brassica napus HOM05D000010 ORTHO05D000063 8.3e-06 55.1 83 37.3
C03p44210 Brassica napus HOM05D000010 ORTHO05D000063 8.3e-06 55.1 83 37.3
BolC3t16693H Brassica oleracea HOM05D000010 ORTHO05D000063 8.3e-06 55.1 83 37.3
BraA03t12825Z Brassica rapa HOM05D000010 ORTHO05D000063 8.3e-06 55.1 83 37.3
BraA04t16099Z Brassica rapa HOM05D000010 ORTHO05D011694 8.3e-06 55.1 152 25.7
Migut.F01914 Erythranthe guttata HOM05D000010 ORTHO05D000063 8.3e-06 55.1 80 33.8
Sc20g0000800 Simmondsia chinensis HOM05D000010 ORTHO05D000063 8.3e-06 55.1 80 36.2
THA.LOC104806103 Tarenaya hassleriana HOM05D000010 ORTHO05D000063 8.3e-06 55.1 203 24.1
TWI38G0572 Tripterygium wilfordii HOM05D000010 ORTHO05D000063 8.3e-06 55.1 219 24.2
Zm00001eb379550 Zea mays HOM05D000010 ORTHO05D049792 8.3e-06 55.1 71 36.6


User provided reference genes

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