Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002033 Sechium edule HOM05D007538 ORTHO05D009464 2.2e-165 585.5 287 100.0
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 4.1e-111 405.2 285 73.7
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 7.1e-95 351.3 286 67.8
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 4.0e-90 335.5 287 64.8
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 2.3e-37 160.2 326 39.0
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 6.8e-37 158.7 319 38.2
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 1.5e-36 157.5 328 37.5
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 7.5e-36 155.2 326 38.3
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 2.8e-35 153.3 313 36.7
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 1.1e-34 151.4 314 37.9
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 4.1e-34 149.4 311 37.0
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 7.0e-34 148.7 323 36.2
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 7.0e-34 148.7 322 36.3
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 1.6e-33 147.5 332 38.3
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 2.0e-33 147.1 323 36.2
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 2.7e-33 146.7 311 36.7
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 4.5e-33 146.0 324 37.0
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 4.5e-33 146.0 321 36.4
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 5.9e-33 145.6 321 36.1
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 5.0e-32 142.5 313 36.4
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 5.5e-31 139.0 325 34.8
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 1.2e-30 137.9 346 34.4
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 8.0e-30 135.2 312 33.7
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 5.2e-29 132.5 321 34.6
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 6.8e-29 132.1 317 34.7
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 1.2e-28 131.3 348 34.2
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 2.0e-28 130.6 314 34.7
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 2.6e-28 130.2 319 34.5
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 2.2e-27 127.1 318 33.6
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 4.8e-27 125.9 304 35.9
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 1.1e-26 124.8 323 36.5
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 9.1e-26 121.7 321 35.2
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 9.1e-26 121.7 325 34.2
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.2e-25 121.3 250 38.4
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 1.0e-24 118.2 324 33.3
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 5.0e-24 115.9 328 32.9
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 6.6e-24 115.5 263 36.5
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 1.9e-23 114.0 314 31.8
Actinidia01319 Actinidia chinensis HOM05D007538 ORTHO05D009464 2.5e-23 113.6 249 37.8
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 7.2e-23 112.1 317 31.2
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 9.5e-23 111.7 322 31.7
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 9.5e-23 111.7 324 31.2
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 1.6e-22 110.9 298 32.6
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 1.6e-22 110.9 322 31.7
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 2.1e-22 110.5 351 31.1
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 2.8e-22 110.2 329 30.1
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 3.6e-22 109.8 280 33.9
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 1.0e-21 108.2 324 31.8
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 1.8e-21 107.5 312 31.1
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 3.0e-21 106.7 319 32.9
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 3.0e-21 106.7 317 28.4
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 1.5e-20 104.4 251 34.3
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 1.5e-20 104.4 317 31.5
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 3.4e-20 103.2 289 29.1
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 5.7e-20 102.4 287 34.5
HanXRQChr03g0083271 Helianthus annuus HOM05D007538 ORTHO05D009464 1.3e-19 101.3 290 33.1
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 1.1e-18 98.2 266 33.1
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 1.1e-18 98.2 319 32.0
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 1.4e-18 97.8 334 32.3
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 2.4e-18 97.1 298 31.5
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 9.2e-18 95.1 350 28.0
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 9.2e-18 95.1 350 28.0
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 1.2e-17 94.7 346 27.5
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 1.2e-17 94.7 336 30.7
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 2.0e-17 94.0 305 31.1
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 2.0e-17 94.0 300 29.3
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 2.7e-17 93.6 326 28.5
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 2.7e-17 93.6 300 30.0
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 5.9e-17 92.4 326 30.1
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 2.3e-16 90.5 323 30.0
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 2.3e-16 90.5 319 29.5
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 2.3e-16 90.5 192 33.9
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 6.6e-16 89.0 300 29.7
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 2.5e-15 87.0 292 29.8
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 4.3e-15 86.3 297 29.6
Ah.12g055490 Amaranthus hybridus HOM05D007538 ORTHO05D009464 5.6e-15 85.9 187 35.3
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 1.2e-14 84.7 320 28.8
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 2.8e-14 83.6 306 26.8
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 3.6e-14 83.2 342 27.5
CAN.G1987.3 Capsicum annuum HOM05D007538 ORTHO05D009464 5.2e-13 79.3 271 29.2
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 5.2e-13 79.3 268 31.3
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 5.8e-12 75.9 302 26.5
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 4.9e-11 72.8 294 27.9
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 1.1e-10 71.6 348 27.0
Cpa.g.sc208.8 Carica papaya HOM05D007538 ORTHO05D009464 1.4e-10 71.2 208 33.2
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 5.4e-10 69.3 228 30.3
SEGI_18774 Sequoiadendron giganteum HOM05D007538 ORTHO05D009464 6.0e-09 65.9 328 25.6
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 3.0e-08 63.5 334 24.3
unitig_22.g5510 Utricularia gibba HOM05D007538 ORTHO05D009464 1.1e-07 61.6 322 27.6
Aqoxy1G00983 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 4.7e-06 56.2 115 40.0


User provided reference genes

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