Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 7.2e-265 916.8 489 100.0
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.6e-246 855.1 485 94.4
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 5.7e-246 854.0 484 94.4
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.8e-245 851.7 485 94.0
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 8.6e-242 840.1 486 93.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 9.0e-199 697.2 502 75.9
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 2.0e-198 696.0 496 76.8
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.2e-197 692.6 488 77.0
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 2.1e-195 686.0 495 73.7
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 3.7e-192 675.2 496 73.6
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.8e-192 674.9 515 71.5
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 5.3e-191 671.4 496 75.2
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.9e-191 671.0 525 70.1
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 6.9e-191 671.0 501 74.7
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.9e-189 664.8 504 71.6
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.4e-188 663.3 494 74.1
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 1.9e-188 662.9 496 73.4
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.5e-188 662.5 501 72.7
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.6e-187 659.8 504 72.6
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 6.0e-187 657.9 498 72.7
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.3e-186 656.8 498 72.5
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.3e-186 656.8 492 73.8
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.1e-186 654.8 499 71.9
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.1e-185 653.7 486 74.1
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.9e-185 652.9 497 72.6
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 4.3e-185 651.7 497 72.6
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 4.3e-185 651.7 499 72.7
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 2.1e-184 649.4 494 71.9
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 3.7e-184 648.7 493 73.4
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 6.2e-184 647.9 502 72.7
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.4e-183 646.7 498 72.1
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.8e-183 646.4 498 72.1
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.8e-183 646.4 499 71.3
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.4e-183 646.0 492 73.0
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.5e-182 641.7 494 70.6
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.3e-181 640.2 498 71.5
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.7e-181 639.8 498 71.7
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.7e-181 639.8 502 70.9
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.9e-181 639.0 493 72.4
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 6.5e-181 637.9 493 71.0
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 3.2e-180 635.6 482 73.2
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 5.5e-180 634.8 497 71.0
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.2e-179 633.6 497 71.0
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.6e-179 633.3 496 71.0
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.7e-179 632.5 498 70.9
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 3.5e-179 632.1 469 74.4
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 6.1e-179 631.3 499 70.7
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 2.3e-178 629.4 498 71.5
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 2.3e-178 629.4 495 70.1
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 3.0e-178 629.0 493 71.0
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 3.9e-178 628.6 502 68.1
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 6.7e-178 627.9 498 70.3
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.5e-177 626.7 485 71.1
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.9e-177 626.3 491 71.1
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.2e-176 622.9 491 71.5
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 3.7e-176 622.1 480 70.8
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 3.7e-176 622.1 496 69.6
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 6.3e-176 621.3 492 69.1
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.4e-175 619.4 498 69.1
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 5.3e-175 618.2 484 72.1
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 6.9e-175 617.8 492 69.1
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.5e-174 616.7 500 69.6
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 3.4e-174 615.5 495 68.7
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 8.5e-173 610.9 503 68.4
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.6e-171 606.7 502 68.5
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 7.9e-171 604.4 526 66.7
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 3.9e-170 602.1 497 67.4
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 3.9e-170 602.1 507 67.3
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.5e-169 599.4 512 65.0
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 9.7e-169 597.4 496 66.7
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.3e-168 597.0 513 66.3
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.7e-168 595.5 496 67.7
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 3.7e-168 595.5 508 66.9
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 4.8e-168 595.1 505 66.7
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 4.8e-168 595.1 484 67.6
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-167 594.0 471 70.7
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.8e-167 593.2 509 67.4
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.4e-167 592.8 508 66.5
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 3.1e-167 592.4 508 67.3
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 3.1e-167 592.4 509 66.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.1e-167 592.0 494 65.2
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.2e-166 590.5 496 67.3
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-166 589.3 517 65.4
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 4.5e-166 588.6 496 67.3
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 5.9e-166 588.2 504 66.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 5.9e-166 588.2 494 66.2
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 2.2e-165 586.3 499 66.3
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 3.8e-165 585.5 508 66.3
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 6.5e-165 584.7 420 75.0
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 8.5e-165 584.3 509 66.6
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.9e-164 583.2 501 62.7
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.2e-163 580.5 494 65.8
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 4.7e-163 578.6 504 66.9
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 6.1e-163 578.2 499 64.9
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 2.0e-161 573.2 503 65.4
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.6e-161 572.8 505 65.1
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 4.4e-161 572.0 501 62.7
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 9.7e-161 570.9 503 65.0
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 2.8e-160 569.3 494 65.4
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 7.0e-159 564.7 431 72.6
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.3e-157 560.5 488 65.4
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 5.0e-149 531.9 380 74.7
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 5.2e-146 521.9 443 67.0
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 8.3e-144 514.6 480 61.0
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.2e-142 510.8 354 76.6
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.6e-142 510.4 491 60.3
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 9.4e-140 501.1 531 58.4
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 7.5e-137 491.5 463 58.7
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.3e-128 464.2 495 54.7
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.2e-128 463.4 476 59.9
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.6e-123 446.0 440 60.5
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 7.5e-121 438.3 506 55.1
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 2.9e-120 436.4 387 61.5
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 4.6e-118 429.1 393 64.1
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 7.8e-118 428.3 401 59.9
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.7e-109 400.6 376 64.4
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 2.7e-102 376.7 486 52.9
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 6.4e-96 355.5 206 85.4
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 2.8e-91 340.1 373 58.2
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 2.8e-91 340.1 373 58.2
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 5.4e-87 325.9 370 50.5
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.1e-86 323.9 320 55.6
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.3e-85 320.5 384 50.3
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.9e-84 317.4 253 70.8
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.1e-83 312.0 221 75.6
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 7.6e-81 305.4 416 48.8
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.0e-74 283.1 222 69.8
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 3.4e-73 280.0 408 42.4
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.1e-58 228.8 202 63.9
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.5e-57 228.0 431 37.6
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 7.2e-55 219.2 270 51.5
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.3e-51 208.4 392 37.2
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.5e-49 199.9 406 36.0
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.2e-48 197.6 164 66.5
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.0e-40 169.9 96 84.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 8.0e-38 162.5 91 87.9
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.1e-34 152.1 106 64.2
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 4.5e-33 146.7 132 66.7
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 4.2e-31 140.2 289 40.1
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.8e-29 134.8 87 77.0
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.8e-22 110.9 185 41.6
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.3e-21 107.8 122 52.5
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.0e-17 94.7 93 53.8
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.7e-17 94.4 147 46.3
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-10 72.0 60 61.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-10 72.0 60 61.7
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.8e-10 71.6 71 59.2
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 7.8e-09 66.2 93 38.7
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.0e-08 65.9 60 58.3
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 3.0e-08 64.3 46 65.2
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.6e-07 60.1 191 33.0
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 1.6e-06 58.5 65 52.3
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 2.1e-06 58.2 51 68.6


User provided reference genes

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