Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 3.4e-130 468.4 245 100.0
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.1e-112 410.2 251 86.1
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 5.5e-112 407.9 247 86.2
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.8e-108 394.8 207 91.8
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.8e-107 392.9 253 83.4
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.8e-97 358.6 232 78.0
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 5.1e-94 348.2 209 79.9
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 8.7e-94 347.4 213 79.3
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 5.7e-93 344.7 223 75.3
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 2.8e-92 342.4 212 80.2
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 2.8e-92 342.4 239 73.6
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 3.7e-92 342.0 231 74.9
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.1e-91 340.5 216 77.3
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.1e-91 340.5 207 78.7
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 2.4e-91 339.3 212 80.2
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.1e-91 339.0 208 78.4
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 3.4e-90 335.5 219 77.2
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 7.7e-90 334.3 215 76.7
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.0e-89 334.0 236 72.9
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.0e-89 334.0 236 72.9
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.0e-89 334.0 209 76.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.7e-89 333.2 209 80.4
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.7e-89 333.2 210 76.7
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 3.8e-89 332.0 214 76.2
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.8e-89 332.0 214 75.2
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.0e-89 331.6 236 72.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.5e-89 331.3 236 72.5
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.5e-89 331.3 236 72.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-88 330.5 236 74.6
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-88 330.5 236 74.6
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 1.1e-88 330.5 236 72.5
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.1e-88 330.5 232 73.3
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.4e-88 330.1 209 77.5
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 3.2e-88 328.9 211 77.3
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 5.5e-88 328.2 210 77.6
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 9.4e-88 327.4 218 76.1
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 1.2e-87 327.0 214 75.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.6e-87 326.6 211 75.8
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.6e-87 326.6 211 73.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.6e-87 326.6 211 73.9
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.6e-87 326.6 211 73.9
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 2.1e-87 326.2 210 77.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 2.7e-87 325.9 203 76.8
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.7e-87 325.9 211 75.8
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 3.6e-87 325.5 211 75.8
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 4.6e-87 325.1 213 74.6
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 7.9e-87 324.3 211 75.8
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.8e-86 323.2 214 76.2
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.8e-86 323.2 217 72.8
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.1e-86 321.6 210 75.7
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.1e-86 321.6 211 74.9
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 5.1e-86 321.6 200 77.0
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 6.7e-86 321.2 211 76.8
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 9.7e-85 317.4 211 74.4
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 9.7e-85 317.4 215 70.7
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.8e-84 315.8 212 73.1
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 6.3e-84 314.7 212 75.0
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 6.3e-84 314.7 212 75.0
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 8.2e-84 314.3 213 73.7
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 5.3e-83 311.6 213 70.9
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 5.3e-83 311.6 209 74.2
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 9.1e-83 310.8 218 72.5
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.6e-82 309.3 197 76.1
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 3.4e-82 308.9 198 77.8
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 3.4e-82 308.9 197 76.1
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 7.7e-82 307.8 217 71.4
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 2.9e-81 305.8 204 74.0
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 2.9e-81 305.8 198 71.7
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 3.8e-81 305.4 211 72.5
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.0e-81 305.1 210 70.5
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 6.5e-81 304.7 207 72.0
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 8.5e-81 304.3 212 71.2
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.1e-80 303.9 210 70.5
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.5e-80 302.8 236 64.8
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 4.2e-80 302.0 205 75.1
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 5.5e-80 301.6 202 74.3
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.2e-79 300.4 194 75.8
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.6e-79 300.1 209 70.3
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.6e-79 300.1 207 68.6
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.1e-79 299.7 201 72.6
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.9e-78 295.4 235 63.4
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.9e-78 295.4 214 68.2
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 3.3e-77 292.4 209 69.4
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.4e-77 292.0 221 67.4
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 5.7e-77 291.6 206 68.0
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 7.4e-77 291.2 198 71.7
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 3.7e-76 288.9 213 67.1
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 8.2e-76 287.7 205 67.3
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.8e-73 278.9 183 72.1
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.5e-72 275.0 223 63.7
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-71 273.9 203 70.0
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.6e-71 273.5 207 67.1
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.1e-71 273.1 203 66.5
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 3.6e-71 272.3 209 66.0
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 3.6e-71 272.3 209 66.0
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 3.6e-71 272.3 209 66.0
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 4.7e-71 271.9 203 69.5
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 4.7e-71 271.9 207 67.1
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 6.1e-71 271.6 207 67.1
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 6.1e-71 271.6 244 58.6
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 8.0e-71 271.2 201 65.7
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.0e-70 270.8 206 66.5
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 1.4e-70 270.4 207 66.7
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.4e-70 270.4 207 66.2
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.4e-70 270.4 207 66.7
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 1.4e-70 270.4 207 66.7
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.8e-70 270.0 207 66.2
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.8e-70 270.0 201 65.2
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 2.3e-70 269.6 204 67.6
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 3.0e-70 269.2 207 66.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 4.0e-70 268.9 212 63.7
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 5.2e-70 268.5 203 67.0
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 6.7e-70 268.1 207 66.7
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.2e-69 267.3 203 67.0
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.6e-69 266.2 214 63.1
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 4.4e-69 265.4 204 65.2
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 9.7e-69 264.2 208 64.4
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 4.1e-67 258.8 195 65.1
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 9.1e-67 257.7 201 62.7
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 1.6e-66 256.9 194 67.5
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 3.5e-66 255.8 209 61.2
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 4.2e-64 248.8 205 59.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 4.0e-62 242.3 216 62.5
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 4.0e-62 242.3 216 63.0
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-61 240.7 199 61.3
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 5.9e-58 228.4 143 76.9
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.5e-56 223.8 163 68.7
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.9e-56 223.4 167 67.7
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.2e-56 222.2 196 56.6
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 7.0e-51 204.9 162 62.3
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.6e-50 203.8 120 80.0
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.1e-48 197.6 227 50.2
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.7e-44 183.7 194 51.5
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.7e-44 183.7 121 71.1
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.0e-42 176.8 127 68.5
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 1.6e-39 167.2 111 66.7
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 8.9e-38 161.4 104 74.0
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.0e-37 160.2 102 72.5
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 9.2e-19 98.2 62 71.0
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 2.1e-15 87.0 94 53.2
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.3e-07 61.2 164 28.7
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 2.8e-07 60.1 150 31.3
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.4e-06 57.8 144 28.5
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.8e-06 57.4 184 26.1


User provided reference genes

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