Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 2.5e-105 385.6 209 100.0
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 2.1e-80 302.8 215 80.0
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 8.0e-80 300.8 215 79.5
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 6.8e-79 297.7 214 79.0
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 3.1e-55 219.2 212 62.3
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 5.2e-55 218.4 212 63.2
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 2.0e-54 216.5 217 63.6
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 4.4e-54 215.3 216 61.6
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 3.7e-53 212.2 214 60.3
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 9.2e-52 207.6 216 60.2
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 2.3e-50 203.0 214 59.3
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 2.3e-50 203.0 212 58.0
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 1.9e-49 199.9 212 60.4
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 5.6e-49 198.4 213 59.6
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 1.6e-48 196.8 213 57.3
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 6.2e-48 194.9 215 58.1
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 1.1e-47 194.1 212 58.5
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.1e-47 194.1 213 57.3
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 3.1e-47 192.6 213 56.8
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 3.1e-47 192.6 218 57.3
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 4.0e-47 192.2 217 55.8
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 6.8e-47 191.4 214 56.5
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 6.8e-47 191.4 214 57.5
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 7.6e-46 188.0 213 54.9
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 2.2e-45 186.4 213 57.7
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.8e-45 185.7 222 55.9
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 8.4e-45 184.5 218 57.3
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 2.4e-44 183.0 214 56.5
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.2e-44 182.6 222 55.0
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 3.2e-44 182.6 222 55.0
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 7.1e-44 181.4 192 57.8
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 1.6e-43 180.3 217 54.4
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 2.7e-43 179.5 221 56.1
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 4.6e-43 178.7 192 57.3
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 3.0e-42 176.0 213 54.5
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 5.1e-42 175.3 218 50.9
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 8.7e-42 174.5 215 54.9
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 8.7e-42 174.5 219 54.3
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 1.1e-41 174.1 217 53.0
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 1.5e-41 173.7 217 53.9
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 3.3e-41 172.6 217 53.0
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 4.8e-40 168.7 218 50.5
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 8.1e-40 167.9 224 50.4
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 1.1e-39 167.5 219 51.6
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.4e-39 167.2 218 50.5
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 6.9e-39 164.9 212 51.4
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 1.2e-38 164.1 212 50.0
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 1.5e-38 163.7 216 52.3
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 1.5e-38 163.7 215 52.1
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 7.6e-38 161.4 214 53.3
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 2.9e-37 159.5 225 51.1
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 4.9e-37 158.7 219 51.1
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 4.9e-37 158.7 220 53.2
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 6.4e-37 158.3 221 52.5
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 1.1e-36 157.5 214 50.9
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 1.4e-36 157.1 221 52.0
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 2.4e-36 156.4 210 52.9
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 4.2e-36 155.6 220 51.8
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 5.4e-36 155.2 209 48.8
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 5.4e-36 155.2 194 55.7
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 7.1e-36 154.8 200 54.0
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 9.3e-36 154.5 200 55.0
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 1.6e-35 153.7 215 50.7
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 7.8e-35 151.4 224 50.4
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.0e-34 151.0 189 52.4
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 6.6e-34 148.3 172 57.0
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 6.6e-34 148.3 172 57.0
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 1.5e-33 147.1 209 49.3
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 2.5e-33 146.4 204 47.5
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 3.3e-33 146.0 150 58.7
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 5.6e-33 145.2 220 50.5
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 5.6e-33 145.2 226 48.2
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 2.8e-32 142.9 215 48.4
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 3.6e-32 142.5 221 48.0
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 4.8e-32 142.1 212 48.1
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 6.2e-32 141.7 227 46.3
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 8.1e-32 141.4 199 50.8
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 4.0e-31 139.0 217 45.2
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 4.0e-31 139.0 215 50.7
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 5.3e-31 138.7 247 46.6
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 5.3e-31 138.7 224 47.3
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 6.9e-31 138.3 215 48.8
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 9.0e-31 137.9 219 46.6
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 2.6e-30 136.3 210 46.2
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 2.6e-30 136.3 210 46.2
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 4.5e-30 135.6 229 45.9
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 7.6e-30 134.8 212 47.2
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 7.6e-30 134.8 217 45.6
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 1.3e-29 134.0 216 48.6
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 1.7e-29 133.7 215 47.9
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.7e-29 133.7 210 45.2
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 1.7e-29 133.7 210 45.2
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 4.9e-29 132.1 208 45.7
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 5.4e-28 128.6 213 46.5
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 9.3e-28 127.9 215 47.0
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 9.3e-28 127.9 220 45.5
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 1.2e-27 127.5 218 46.8
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 1.6e-27 127.1 217 44.7
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 2.1e-27 126.7 220 44.1
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 2.1e-27 126.7 227 45.8
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 2.7e-27 126.3 216 42.6
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 2.7e-27 126.3 193 47.7
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 1.3e-26 124.0 215 47.0
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 1.3e-26 124.0 223 43.9
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 5.6e-25 118.6 216 41.7
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 2.1e-24 116.7 211 45.5
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 3.1e-23 112.8 222 41.0
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.6e-22 109.8 213 41.8
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 2.6e-22 109.8 169 48.5
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 1.3e-21 107.5 127 55.9
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 6.5e-21 105.1 228 41.2
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 8.4e-21 104.8 214 43.9
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 7.1e-20 101.7 228 40.4
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 6.0e-19 98.6 180 42.8
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 2.5e-17 93.2 90 61.1
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 1.1e-15 87.8 95 56.8
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.1e-15 86.3 131 46.6
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 2.6e-14 83.2 212 39.6
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 1.3e-13 80.9 176 40.9
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 1.3e-13 80.9 176 40.9
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 1.3e-13 80.9 176 40.9
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.3e-13 80.9 173 38.7
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 2.9e-13 79.7 182 37.9
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 5.0e-13 79.0 209 35.9
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 2.5e-09 66.6 218 37.2
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 5.7e-09 65.5 188 34.6
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 9.7e-09 64.7 216 32.4
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 1.6e-08 63.9 84 51.2
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 1.6e-08 63.9 84 51.2
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 2.8e-08 63.2 84 51.2
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 2.8e-08 63.2 84 51.2
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 4.8e-08 62.4 110 45.5
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 1.1e-07 61.2 171 36.3
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 2.4e-07 60.1 76 51.3
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 9.0e-07 58.2 80 45.0
Thecc.04G308600 Theobroma cacao HOM05D005571 ORTHO05D006919 1.5e-06 57.4 91 46.2
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 2.6e-06 56.6 184 33.2
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 4.5e-06 55.8 90 47.8
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 4.5e-06 55.8 90 47.8


User provided reference genes

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