Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.5e-112 409.5 199 100.0
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 3.9e-92 341.7 199 84.9
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 1.1e-91 340.1 199 84.4
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 4.2e-86 321.6 198 80.3
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 1.0e-84 317.0 199 79.9
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 1.0e-68 263.8 199 66.3
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 3.0e-68 262.3 198 67.2
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 1.3e-66 256.9 178 71.9
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 1.3e-63 246.9 180 68.3
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.9e-62 243.0 198 65.2
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 3.2e-62 242.3 198 61.6
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 5.5e-62 241.5 198 60.6
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.4e-60 236.9 184 63.6
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 2.3e-60 236.1 194 62.4
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 3.0e-60 235.7 200 59.0
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 3.1e-57 225.7 191 59.7
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.2e-56 223.8 177 59.9
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 5.9e-56 221.5 184 58.2
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 5.0e-55 218.4 180 61.1
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 6.5e-55 218.0 183 63.4
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 1.1e-54 217.2 198 56.6
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 1.9e-54 216.5 215 51.6
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 9.4e-54 214.2 206 54.4
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 1.2e-53 213.8 170 63.5
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 2.1e-53 213.0 203 54.2
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.1e-53 213.0 170 62.4
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 2.1e-53 213.0 183 61.2
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 6.1e-53 211.5 170 63.5
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.0e-52 210.7 201 54.7
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 1.8e-52 209.9 182 56.6
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 2.3e-52 209.5 199 56.3
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.9e-52 208.8 176 60.8
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 5.2e-52 208.4 171 61.4
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 3.3e-51 205.7 171 61.4
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 5.7e-51 204.9 179 59.2
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 5.7e-51 204.9 179 59.2
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 7.4e-51 204.5 181 60.2
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 9.7e-51 204.1 174 58.0
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.3e-50 203.8 202 54.0
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 1.7e-50 203.4 180 55.6
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 2.8e-50 202.6 171 55.6
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 4.8e-50 201.8 208 52.4
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 4.8e-50 201.8 206 53.4
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 6.3e-50 201.4 197 55.3
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 8.2e-50 201.1 179 55.3
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 9.1e-49 197.6 198 52.0
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.6e-48 196.8 171 58.5
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.6e-48 196.8 182 54.4
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.0e-48 196.4 180 57.8
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 2.6e-48 196.1 200 51.5
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 3.5e-48 195.7 198 52.5
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 3.5e-48 195.7 208 50.5
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 5.9e-48 194.9 176 57.4
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 5.9e-48 194.9 190 53.7
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 7.7e-48 194.5 191 55.5
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 1.3e-47 193.7 198 52.5
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 3.8e-47 192.2 183 55.2
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 5.0e-47 191.8 178 56.2
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 6.5e-47 191.4 181 54.7
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 1.1e-46 190.7 187 53.5
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.9e-46 189.9 180 53.3
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 1.9e-46 189.9 181 54.1
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 4.2e-46 188.7 185 51.4
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.2e-45 187.2 208 49.0
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.6e-45 186.8 180 51.7
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 2.7e-45 186.0 177 54.8
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 3.6e-45 185.7 178 55.1
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 3.6e-45 185.7 171 56.1
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 8.0e-45 184.5 218 47.2
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 1.0e-44 184.1 198 47.0
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 1.8e-44 183.3 189 51.3
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 3.0e-44 182.6 177 53.7
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 4.0e-44 182.2 177 50.3
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 4.0e-44 182.2 186 53.2
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 5.2e-44 181.8 204 49.5
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 8.8e-44 181.0 169 52.1
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 2.6e-43 179.5 191 48.7
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 3.3e-43 179.1 205 44.4
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.3e-42 177.2 186 48.4
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.2e-42 176.4 182 52.7
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 4.8e-42 175.3 189 46.0
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 4.8e-42 175.3 155 56.8
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 6.3e-42 174.9 191 48.7
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 1.4e-41 173.7 195 46.2
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 1.4e-41 173.7 195 46.2
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 2.4e-41 172.9 178 52.2
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 3.1e-41 172.6 190 45.8
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 3.1e-41 172.6 195 45.6
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 3.1e-41 172.6 195 45.6
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 3.1e-41 172.6 195 45.6
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 4.1e-41 172.2 174 50.0
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 4.1e-41 172.2 178 51.7
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 7.0e-41 171.4 178 48.3
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 4.5e-40 168.7 206 42.7
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 5.9e-40 168.3 205 44.9
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.7e-39 166.8 198 47.0
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 8.5e-39 164.5 195 51.3
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 1.1e-38 164.1 183 48.1
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 3.2e-38 162.5 139 57.6
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 4.2e-38 162.2 185 48.1
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 5.5e-38 161.8 150 54.7
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 5.5e-38 161.8 184 47.8
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 4.7e-37 158.7 228 42.1
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.5e-35 153.7 230 42.6
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 3.4e-35 152.5 131 57.3
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 5.7e-35 151.8 192 44.3
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 7.5e-35 151.4 185 45.4
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.4e-33 147.1 147 52.4
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.8e-33 146.7 141 53.2
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 5.4e-33 145.2 146 51.4
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.2e-32 144.1 138 50.7
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 2.7e-32 142.9 152 50.7
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 7.7e-32 141.4 201 41.3
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.9e-31 139.4 180 44.4
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 3.8e-31 139.0 110 58.2
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 8.5e-31 137.9 99 65.7
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.5e-30 136.3 138 54.3
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 2.5e-30 136.3 198 44.9
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.6e-29 133.7 185 43.8
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 1.6e-29 133.7 163 46.6
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 2.8e-29 132.9 230 36.5
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 8.0e-29 131.3 134 52.2
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.4e-28 130.6 189 38.1
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.8e-28 130.2 110 56.4
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.0e-28 129.4 175 38.9
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 5.2e-28 128.6 93 60.2
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 1.2e-27 127.5 170 44.7
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.2e-27 127.5 188 37.8
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 1.7e-26 123.6 185 39.5
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 3.7e-26 122.5 183 39.3
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 1.4e-25 120.6 165 41.2
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.0e-23 114.4 199 39.2
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.8e-23 112.5 190 39.5
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.0e-23 112.1 199 38.7
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.5e-22 110.5 195 33.3
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 2.5e-22 109.8 287 31.7
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 4.3e-22 109.0 195 37.4
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 7.3e-22 108.2 185 35.7
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.8e-21 106.3 105 50.5
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 6.8e-20 101.7 138 41.3
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.4e-19 99.4 191 32.5
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 4.4e-19 99.0 77 58.4
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.7e-18 97.1 175 34.3
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.9e-18 96.3 103 41.7
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 3.7e-18 95.9 155 40.0
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 3.7e-18 95.9 116 44.8
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 4.6e-16 89.0 168 32.7
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 3.9e-15 85.9 105 43.8
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.5e-14 84.0 103 44.7
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 3.3e-14 82.8 59 62.7
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 3.6e-13 79.3 57 64.9
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 5.2e-12 75.5 239 26.4
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 6.0e-08 62.0 129 34.1
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 7.8e-08 61.6 42 64.3
CBR_g17049 Chara braunii HOM05D068249 ORTHO05D005712 1.5e-06 57.4 222 23.4


User provided reference genes

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