Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 5081.9 2524 100.0
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 4166.7 2530 81.3
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 4166.3 2530 81.3
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 0.0e+00 4117.0 2558 80.4
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 2778.8 2582 56.5
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 2743.4 2577 55.3
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 2735.7 2664 53.9
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 2718.0 2575 54.8
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2713.3 2580 54.7
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 2701.0 2574 54.1
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2693.3 2574 54.0
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 2686.8 2581 54.7
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2679.4 2574 53.8
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2660.6 2581 53.4
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2660.6 2574 53.5
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 2659.4 2574 53.5
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 2612.8 2613 53.8
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 2597.0 2581 53.5
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 2593.1 2570 53.2
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 2582.4 2585 53.7
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 2581.6 2580 52.8
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 2578.1 2585 52.8
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2576.6 2585 53.0
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 2575.4 2588 53.0
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 2572.0 2560 52.2
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 2570.0 2584 52.5
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 2555.8 2587 52.4
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 2542.7 2436 54.5
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 2532.7 2564 52.3
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 2532.3 2594 52.0
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 2518.4 2589 52.5
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 2505.7 2592 51.4
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 2487.2 2569 51.6
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 2478.0 2565 51.8
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 2474.1 2557 51.0
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 2471.8 2548 51.4
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2423.7 2560 50.4
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 2423.3 2560 50.4
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 2395.5 2578 49.9
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 2395.2 2565 49.7
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 2388.2 2577 50.3
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 2372.0 2541 50.6
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 2310.0 2648 48.5
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 2291.2 2579 48.7
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2250.7 2426 49.8
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 2242.2 2603 48.0
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 0.0e+00 2190.6 2582 47.4
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 2177.9 2602 47.3
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 2172.5 2593 46.8
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2153.3 2577 46.1
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2146.7 2582 46.0
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2145.9 2576 46.1
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 0.0e+00 2144.8 2581 46.5
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 2144.0 2594 46.5
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2138.6 2574 47.0
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2134.4 2571 45.9
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 2134.4 2562 47.2
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 2133.2 2555 46.3
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 0.0e+00 2119.0 2571 46.1
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 0.0e+00 2110.9 2591 46.1
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 2109.0 2580 46.0
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 0.0e+00 2086.6 2577 46.5
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 0.0e+00 2083.5 2558 47.0
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2074.3 2570 45.8
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 0.0e+00 2074.3 2568 45.9
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 0.0e+00 2073.9 2568 45.9
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 0.0e+00 2063.1 2565 45.8
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 0.0e+00 2045.4 2585 45.0
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 2011.5 2551 45.0
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 0.0e+00 2007.6 2574 44.7
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 0.0e+00 2003.4 2564 44.9
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 0.0e+00 1988.4 2590 43.6
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 1968.4 2547 44.2
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 0.0e+00 1934.1 1954 53.2
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 0.0e+00 1925.2 2431 45.2
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1892.1 2575 42.5
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 0.0e+00 1882.1 2579 43.0
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1868.6 2534 43.7
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1748.0 1860 49.8
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 0.0e+00 1744.2 1980 48.5
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 0.0e+00 1686.8 2583 39.3
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1591.2 1949 46.3
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 0.0e+00 1582.0 2579 37.7
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 0.0e+00 1491.9 2569 37.0
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 0.0e+00 1343.2 1582 48.4
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1343.2 1362 51.1
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 0.0e+00 1331.2 1543 48.9
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 0.0e+00 1322.8 1550 48.5
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1321.6 1332 52.0
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1234.2 1368 47.5
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1148.3 1354 45.6
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 6.9e-303 1045.4 2739 29.9
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.6e-297 1026.9 1812 37.0
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 4.8e-296 1022.7 1121 51.6
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.1e-292 1011.5 1372 43.1
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 9.8e-273 945.3 1086 49.7
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 1.3e-253 881.7 1086 45.4
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 1.3e-253 881.7 1086 45.4
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 8.6e-253 879.0 1191 40.7
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.1e-234 818.9 1107 43.5
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 3.1e-226 790.8 1017 42.6
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.4e-215 755.4 1611 32.3
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.1e-207 729.2 1179 36.9
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 7.9e-190 669.8 488 68.4
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 2.3e-181 641.7 480 66.2
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 6.1e-174 617.1 476 63.9
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 8.0e-174 616.7 561 56.1
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 3.7e-171 607.8 1677 29.0
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.2e-168 598.6 735 43.5
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.8e-165 589.0 750 47.3
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.3e-157 562.0 573 54.5
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 4.0e-157 561.2 1116 35.1
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 2.2e-155 555.4 459 63.2
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 8.0e-142 510.4 751 37.8
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 3.6e-126 458.4 430 53.7
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 5.2e-125 454.5 459 48.8
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 4.0e-117 428.3 936 32.6
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.4e-114 419.9 1759 27.3
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 1.1e-111 410.2 289 69.2
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 8.4e-107 394.0 513 45.6
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 7.4e-87 327.8 228 71.1
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 8.2e-78 297.7 230 64.8
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.8e-72 280.0 197 71.6
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 1.7e-67 263.5 179 70.9
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 3.0e-64 252.7 384 41.1
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 3.3e-63 249.2 613 29.7
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 6.3e-62 245.0 193 60.6
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.4e-61 243.8 272 53.3
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 5.9e-60 238.4 215 54.9
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 1.8e-53 216.9 231 45.9
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 2.6e-47 196.4 309 40.8
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 5.0e-43 182.2 269 36.1
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.5e-42 180.6 412 35.2
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.2e-41 177.6 136 69.1
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 3.0e-40 172.9 120 70.0
Psat2g140840 Pisum sativum HOM05D004435 ORTHO05D005103 1.1e-37 164.5 534 27.3
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 5.6e-34 152.1 235 35.7
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 3.6e-33 149.4 114 64.9
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 8.9e-32 144.8 114 60.5
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 1.5e-31 144.1 202 36.1
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 4.4e-31 142.5 183 37.2
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.2e-30 140.2 114 59.6
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.8e-29 137.1 233 35.6
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 1.2e-28 134.4 88 73.9
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 6.0e-28 132.1 263 32.7
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 1.0e-27 131.3 102 70.6
ATR0028G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 8.6e-27 128.3 528 24.8
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 7.3e-26 125.2 74 79.7
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 2.8e-25 123.2 228 31.6
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.2e-23 117.9 103 59.2
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 2.0e-20 107.1 312 28.2
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 2.0e-20 107.1 305 26.6
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 3.5e-20 106.3 117 49.6
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 4.6e-20 105.9 137 40.9
Nitab4.5_0007244g0040 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.2e-17 97.8 121 44.6
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 4.1e-13 82.8 130 40.0
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 3.5e-12 79.7 151 39.1
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 6.6e-11 75.5 47 74.5
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.5e-10 74.3 120 42.5
Psat0ss888g0080 Pisum sativum HOM05D004435 ORTHO05D005103 2.5e-10 73.6 85 42.4
Psat5g020760 Pisum sativum HOM05D004435 ORTHO05D005103 2.8e-09 70.1 85 41.2
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 6.2e-09 68.9 57 71.9


User provided reference genes

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