Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 5.2e-25 117.1 66 100.0
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 9.1e-22 106.3 66 93.9
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.6e-21 105.5 66 92.4
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 4.5e-21 104.0 67 89.6
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.3e-20 101.7 66 86.4
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.9e-20 101.3 66 86.4
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.9e-20 101.3 66 84.8
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 2.9e-20 101.3 66 87.9
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 2.9e-20 101.3 66 89.4
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.0e-20 100.5 67 86.6
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 5.0e-20 100.5 65 89.2
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.0e-20 100.5 66 84.8
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.9e-19 98.6 66 86.4
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.9e-19 98.6 66 84.8
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 3.3e-19 97.8 66 81.8
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.3e-19 97.8 66 83.3
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.3e-19 97.8 67 83.6
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.3e-19 97.8 67 83.6
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.3e-19 97.8 66 83.3
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 3.3e-19 97.8 64 84.4
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 4.2e-19 97.4 66 84.8
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 4.2e-19 97.4 66 84.8
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 5.5e-19 97.1 67 82.1
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 5.5e-19 97.1 64 89.1
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 9.5e-19 96.3 68 83.8
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 9.5e-19 96.3 66 83.3
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.2e-18 95.9 64 82.8
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 1.2e-18 95.9 62 85.5
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.2e-18 95.9 66 83.3
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.6e-18 95.5 66 81.8
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 2.8e-18 94.7 67 83.6
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.8e-18 94.7 71 78.9
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 2.8e-18 94.7 71 78.9
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 3.6e-18 94.4 67 82.1
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 4.7e-18 94.0 64 81.2
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 6.1e-18 93.6 63 79.4
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.1e-18 93.6 68 82.4
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 6.1e-18 93.6 64 81.2
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.1e-18 93.6 66 81.8
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.1e-18 93.6 66 83.3
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 8.0e-18 93.2 68 83.8
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.0e-18 93.2 66 83.3
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.0e-18 93.2 66 83.3
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.0e-18 93.2 66 80.3
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.0e-17 92.8 66 81.8
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-17 92.4 66 81.8
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.4e-17 92.4 67 80.6
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 5.2e-17 90.5 61 85.2
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 8.9e-17 89.7 65 80.0
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 8.9e-17 89.7 65 80.0
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.2e-16 89.4 66 80.3
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.2e-16 89.4 66 77.3
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.2e-16 89.4 66 78.8
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.5e-16 89.0 64 81.2
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.5e-16 89.0 64 79.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 3.4e-16 87.8 64 79.7
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 4.4e-16 87.4 66 78.8
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 4.4e-16 87.4 67 74.6
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 9.8e-16 86.3 64 78.1
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 2.2e-15 85.1 66 69.7
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.2e-15 85.1 65 73.8
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 2.2e-15 85.1 61 82.0
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.2e-15 85.1 66 75.8
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.7e-15 84.3 60 81.7
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 3.7e-15 84.3 64 75.0
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 8.3e-15 83.2 65 72.3
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 8.3e-15 83.2 70 72.9
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.1e-14 82.8 66 72.7
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.1e-14 82.8 66 72.7
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.4e-14 82.4 66 75.8
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.8e-14 82.0 62 77.4
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 2.4e-14 81.6 61 78.7
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.4e-14 81.6 58 72.4
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.4e-14 81.6 58 72.4
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.4e-14 81.6 64 73.4
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.1e-14 81.3 61 78.7
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 5.4e-14 80.5 59 81.4
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 7.0e-14 80.1 67 71.6
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 7.0e-14 80.1 70 72.9
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 1.2e-13 79.3 63 66.7
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 1.2e-13 79.3 63 66.7
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 1.2e-13 79.3 59 79.7
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 2.0e-13 78.6 64 70.3
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 2.0e-13 78.6 57 82.5
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.0e-13 78.6 55 83.6
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 3.5e-13 77.8 64 70.3
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 4.5e-13 77.4 64 67.2
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 4.5e-13 77.4 64 67.2
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 4.5e-13 77.4 64 67.2
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 4.5e-13 77.4 64 67.2
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 4.5e-13 77.4 64 67.2
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 7.8e-13 76.6 77 68.8
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 1.7e-12 75.5 64 68.8
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 2.9e-12 74.7 65 66.2
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 2.9e-12 74.7 64 68.8
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 2.9e-12 74.7 58 77.6
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 4.3e-11 70.9 52 80.8
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.0e-09 66.2 62 66.1
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 1.8e-09 65.5 60 68.3
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 5.2e-09 63.9 61 59.0
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.2e-09 63.9 61 59.0
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 8.9e-09 63.2 76 57.9
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 1.5e-08 62.4 59 59.3
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 2.0e-08 62.0 61 57.4
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.0e-08 62.0 63 55.6
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 9.8e-08 59.7 68 52.9
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 9.8e-08 59.7 68 52.9
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 9.8e-08 59.7 55 58.2
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.3e-07 59.3 61 57.4
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.3e-07 59.3 59 57.6
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.7e-07 58.9 45 80.0
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.7e-07 58.9 61 55.7
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.2e-07 58.5 60 58.3
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.2e-07 58.5 55 58.2
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 2.9e-07 58.2 61 50.8
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 3.7e-07 57.8 53 62.3
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 3.7e-07 57.8 63 54.0
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 4.9e-07 57.4 55 56.4
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.3e-07 56.6 68 50.0
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 8.3e-07 56.6 61 50.8
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 74 54.1
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 1.1e-06 56.2 61 54.1
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.1e-06 56.2 59 55.9
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.1e-06 56.2 60 53.3
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.4e-06 55.8 63 54.0
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.9e-06 55.5 59 55.9
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.9e-06 55.5 59 55.9
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 1.9e-06 55.5 58 56.9
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.9e-06 55.5 54 57.4
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.9e-06 55.5 59 55.9
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.4e-06 55.1 59 52.5
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 3.2e-06 54.7 53 58.5
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 4.1e-06 54.3 60 51.7
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.1e-06 54.3 55 58.2
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.2e-06 53.1 59 52.5
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 9.2e-06 53.1 59 54.2


User provided reference genes

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