Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 2.6e-127 458.8 233 100.0
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 2.7e-100 369.0 231 81.8
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.3e-96 355.9 231 77.9
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 1.0e-91 340.5 247 74.5
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.0e-87 326.2 192 84.9
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 3.0e-75 285.8 227 60.8
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 8.6e-75 284.3 229 60.7
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.5e-74 283.5 227 61.2
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 4.7e-73 278.5 230 60.9
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.1e-72 277.3 232 61.2
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 4.0e-72 275.4 229 60.7
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 4.0e-72 275.4 229 60.7
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 4.0e-72 275.4 229 60.7
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 5.2e-72 275.0 229 58.5
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 8.9e-72 274.2 229 60.3
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 8.9e-72 274.2 225 62.2
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 4.4e-71 271.9 230 59.6
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 5.8e-71 271.6 231 60.2
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 5.8e-71 271.6 230 59.6
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.3e-70 270.4 228 60.1
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.9e-70 269.2 231 59.3
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.9e-70 268.5 232 58.2
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 4.9e-70 268.5 227 58.1
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 4.9e-70 268.5 228 61.8
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 6.4e-70 268.1 233 57.9
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.9e-69 266.5 227 61.2
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.9e-69 266.5 239 56.9
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 3.2e-69 265.8 200 64.5
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 4.2e-69 265.4 227 59.5
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 5.4e-69 265.0 227 59.9
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.6e-68 263.5 227 58.6
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 2.1e-68 263.1 228 59.2
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.5e-68 262.3 199 64.8
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 4.6e-68 261.9 188 67.6
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 4.6e-68 261.9 229 59.0
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 4.6e-68 261.9 206 63.6
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.0e-68 261.5 197 65.5
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 1.3e-67 260.4 228 57.9
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 3.0e-67 259.2 197 63.5
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 6.6e-67 258.1 228 58.3
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 6.6e-67 258.1 227 55.1
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 2.5e-66 256.1 227 57.7
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 4.3e-66 255.4 230 56.1
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 7.3e-66 254.6 230 55.2
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.8e-65 252.7 229 55.9
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 4.8e-65 251.9 227 54.2
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.1e-65 251.1 230 55.7
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.8e-64 250.0 230 57.0
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 1.5e-63 246.9 227 55.9
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 3.4e-63 245.7 230 56.5
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 3.4e-63 245.7 228 55.7
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 3.4e-63 245.7 230 57.0
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 4.5e-63 245.4 227 54.2
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 5.8e-63 245.0 230 52.6
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 9.9e-63 244.2 207 59.4
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.7e-62 243.4 228 52.6
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.9e-62 242.7 227 55.5
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 6.4e-62 241.5 192 60.9
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 8.4e-62 241.1 192 58.9
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 1.9e-61 240.0 228 52.6
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 2.4e-61 239.6 229 52.8
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 2.4e-61 239.6 229 51.5
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 4.2e-61 238.8 227 51.5
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 5.4e-61 238.4 232 52.2
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 9.3e-61 237.7 202 57.9
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.6e-60 236.9 200 58.0
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.6e-60 236.9 230 52.6
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.6e-60 236.9 233 54.1
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 3.5e-60 235.7 193 60.1
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 3.5e-60 235.7 243 51.0
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 6.0e-60 235.0 192 57.8
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 7.9e-60 234.6 192 58.9
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 2.3e-59 233.0 192 57.3
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 5.1e-59 231.9 228 50.0
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 6.7e-59 231.5 192 57.8
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 6.7e-59 231.5 228 50.0
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 8.7e-59 231.1 203 58.6
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 8.7e-59 231.1 185 60.0
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 1.1e-58 230.7 192 56.2
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 2.5e-58 229.6 234 53.4
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 2.5e-58 229.6 228 52.6
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.3e-58 229.2 227 52.9
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 3.3e-58 229.2 230 49.6
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 7.4e-58 228.0 230 51.3
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 2.1e-57 226.5 198 59.6
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 2.1e-57 226.5 196 55.1
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 6.2e-57 224.9 195 54.4
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 6.2e-57 224.9 195 54.4
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.1e-56 224.2 182 56.6
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 1.1e-56 224.2 195 54.4
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 1.4e-56 223.8 231 51.5
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.4e-56 223.8 228 48.2
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.8e-56 223.4 182 56.0
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.8e-56 223.4 245 48.6
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.1e-56 222.6 245 47.8
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 6.9e-56 221.5 208 51.9
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.2e-55 220.7 246 47.6
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.5e-55 220.3 193 59.6
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 2.0e-55 219.9 230 50.0
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.6e-55 219.5 230 50.4
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 5.8e-55 218.4 227 48.0
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 7.6e-55 218.0 228 50.0
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 9.9e-55 217.6 263 46.4
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.3e-54 217.2 201 51.2
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.3e-54 217.2 231 47.6
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.7e-54 216.9 222 50.0
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 2.4e-53 213.0 198 52.0
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 5.5e-53 211.8 247 49.8
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 5.5e-53 211.8 199 50.8
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.2e-52 210.7 227 50.2
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.2e-52 210.7 192 53.1
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.5e-52 209.1 187 54.0
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 7.9e-52 208.0 256 43.4
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 5.6e-50 201.8 183 53.6
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.3e-49 200.7 142 68.3
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 3.7e-49 199.1 183 52.5
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 6.5e-46 188.3 231 46.3
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.6e-44 183.7 161 54.7
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 3.5e-44 182.6 173 54.3
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.0e-43 181.0 225 44.0
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.8e-43 180.3 149 59.7
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.0e-43 179.5 230 41.3
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 5.7e-42 175.3 233 44.6
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 7.4e-42 174.9 123 66.7
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 3.1e-40 169.5 231 43.7
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 2.9e-38 162.9 209 50.7
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.3e-35 154.1 154 48.7
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 1.3e-35 154.1 254 37.4
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.5e-34 150.6 243 37.9
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 4.3e-34 149.1 139 54.0
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 4.1e-32 142.5 203 39.9
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 5.5e-29 132.1 253 33.2
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.0e-26 123.6 183 38.8
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 5.7e-26 122.1 178 39.3
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 7.4e-26 121.7 184 37.5
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.7e-22 110.5 116 49.1
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 3.8e-22 109.4 76 69.7
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 5.7e-18 95.5 88 53.4
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 9.1e-16 88.2 95 45.3
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 3.0e-11 73.2 58 55.2
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 6.7e-11 72.0 169 29.0
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 4.4e-10 69.3 139 31.7
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 7.5e-10 68.6 51 70.6
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 5.0e-06 55.8 35 74.3


User provided reference genes

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