Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 0.0e+00 1409.4 778 100.0
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 1.1e-302 1043.1 792 78.0
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 4.9e-300 1034.2 857 72.3
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 1.5e-288 996.1 791 75.0
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 9.4e-251 870.5 694 75.9
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 6.6e-212 741.5 806 58.8
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 8.6e-212 741.1 800 59.1
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 2.3e-204 716.5 808 57.3
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.9e-203 713.4 782 58.1
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.5e-203 713.0 782 58.1
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 2.5e-203 713.0 793 60.3
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 6.9e-201 704.9 789 57.9
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.8e-199 699.1 802 56.9
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 3.2e-198 696.0 803 56.4
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 2.7e-197 693.0 794 58.8
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 4.6e-197 692.2 809 57.4
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.3e-196 690.6 788 57.1
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 3.0e-196 689.5 804 56.1
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.6e-194 683.7 789 59.1
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 9.0e-193 677.9 797 56.0
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.4e-190 670.6 801 55.9
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 3.2e-190 669.5 801 54.6
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.3e-187 659.4 802 55.0
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 5.6e-187 658.7 801 55.3
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 6.9e-185 651.7 822 53.6
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 4.5e-184 649.0 797 54.2
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 5.8e-184 648.7 815 53.9
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.3e-183 647.5 811 54.5
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 1.3e-183 647.5 838 53.7
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 2.9e-183 646.4 798 53.8
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.4e-182 644.0 802 54.2
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 1.4e-182 644.0 802 53.9
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.6e-181 640.6 808 54.2
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.6e-181 640.6 793 54.7
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 1.0e-180 637.9 799 53.1
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 2.3e-180 636.7 806 53.7
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 2.3e-180 636.7 802 54.0
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 8.7e-180 634.8 802 53.7
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.9e-179 633.6 807 53.9
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.9e-179 633.6 947 47.6
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.3e-179 632.5 802 53.9
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 9.6e-179 631.3 803 53.1
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.7e-178 629.4 806 53.2
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 6.9e-177 625.2 806 53.7
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.9e-175 619.0 776 54.3
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 6.5e-175 618.6 827 51.0
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.9e-174 617.1 826 52.1
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 2.5e-174 616.7 717 56.1
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 3.5e-173 612.8 804 53.0
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 3.5e-173 612.8 795 53.2
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 5.1e-172 609.0 791 54.2
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 8.7e-172 608.2 793 52.5
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 8.7e-172 608.2 790 52.0
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 3.3e-171 606.3 790 51.8
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 7.4e-171 605.1 780 52.9
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 9.7e-171 604.7 784 52.3
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 1.2e-168 597.8 794 52.5
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 2.0e-168 597.0 827 51.3
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 2.0e-168 597.0 789 52.5
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 2.9e-167 593.2 795 51.8
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.9e-166 590.5 797 51.2
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 2.5e-166 590.1 785 52.0
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.2e-165 587.8 841 50.2
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 4.6e-165 585.9 801 50.2
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 7.9e-165 585.1 792 51.4
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 1.8e-164 583.9 798 51.9
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.8e-164 583.9 805 51.2
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.7e-162 577.4 789 49.7
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 1.1e-161 574.7 806 49.8
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.8e-161 573.9 790 49.1
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 1.5e-160 570.9 795 49.9
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 3.4e-160 569.7 706 52.3
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 4.5e-160 569.3 797 50.8
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 8.5e-159 565.1 790 51.8
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.1e-157 560.5 785 50.2
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 3.9e-156 556.2 792 50.3
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 8.8e-156 555.1 606 57.9
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.1e-155 554.7 791 50.1
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 2.0e-155 553.9 606 57.8
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.8e-153 547.4 809 48.9
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 6.5e-151 538.9 791 50.1
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 3.2e-150 536.6 815 49.0
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 4.2e-150 536.2 794 48.7
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 5.5e-150 535.8 724 48.9
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 8.0e-149 531.9 788 49.7
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.4e-148 531.2 792 50.1
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 3.9e-148 529.6 789 47.5
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 2.4e-145 520.4 799 48.3
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 1.6e-144 517.7 828 47.5
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 3.5e-144 516.5 721 47.6
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.3e-143 514.6 696 51.3
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 5.0e-143 512.7 823 46.8
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 2.7e-141 506.9 790 46.5
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.8e-140 504.2 629 54.1
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 1.2e-139 501.5 535 58.5
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 2.6e-139 500.4 719 47.3
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 4.4e-139 499.6 820 44.6
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 4.8e-138 496.1 787 45.7
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 4.8e-138 496.1 787 45.7
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 8.2e-138 495.4 787 45.7
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 8.2e-138 495.4 720 47.2
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.4e-137 494.6 792 45.6
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 7.2e-134 482.3 739 46.3
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 2.3e-132 477.2 731 46.4
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 5.2e-132 476.1 797 45.2
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 8.8e-132 475.3 723 46.9
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 1.2e-131 474.9 787 46.3
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.5e-131 474.6 792 45.3
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 7.5e-131 472.2 792 45.7
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.3e-130 471.5 610 53.1
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.3e-130 471.5 749 46.1
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 2.2e-130 470.7 809 44.5
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 2.2e-130 470.7 800 44.9
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 4.1e-129 466.5 723 45.9
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 7.7e-128 462.2 697 46.6
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 3.8e-127 459.9 784 43.2
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 7.2e-126 455.7 795 45.7
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 7.2e-126 455.7 519 55.9
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 2.3e-124 450.7 710 45.8
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 4.0e-124 449.9 795 43.1
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 3.4e-123 446.8 784 43.4
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 2.8e-122 443.7 786 43.8
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 7.0e-121 439.1 785 42.8
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 9.2e-121 438.7 808 42.0
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 3.5e-120 436.8 668 46.3
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.3e-119 434.9 779 42.1
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 1.7e-119 434.5 794 43.5
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 7.5e-115 419.1 724 44.1
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 2.9e-114 417.2 848 40.4
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 3.0e-111 407.1 702 44.2
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 3.0e-111 407.1 688 44.2
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 1.8e-100 371.3 602 45.2
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 2.0e-99 367.9 700 41.1
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 6.4e-98 362.8 497 48.3
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 1.7e-95 354.8 382 58.9
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 2.4e-92 344.4 798 37.0
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.9e-90 337.4 396 54.8
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 2.1e-88 331.3 435 50.3
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 6.0e-72 276.6 335 52.5
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.3e-69 268.9 360 53.1
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 1.5e-59 235.3 324 50.9
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 5.8e-59 233.4 380 44.5
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 2.9e-58 231.1 251 57.0
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 5.5e-57 226.9 759 32.0
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 9.0e-52 209.5 410 39.8
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 6.5e-50 203.4 393 41.2
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 2.5e-46 191.4 324 39.2
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 5.7e-46 190.3 204 60.8
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 3.9e-39 167.5 145 60.7
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 1.5e-35 155.6 184 57.1
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 4.7e-32 144.1 138 60.9
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 5.3e-28 130.6 106 69.8
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 4.5e-27 127.5 273 38.5
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 7.7e-27 126.7 190 47.4
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 1.7e-21 109.0 120 52.5
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.2e-17 94.7 86 62.8
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.2e-16 92.8 389 28.3
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 3.6e-16 91.3 287 31.0
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 8.8e-15 86.7 151 37.1
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 5.7e-14 84.0 181 37.0
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 9.8e-14 83.2 324 32.1
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.7e-13 81.3 104 51.0
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.9e-11 73.9 66 59.1
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 2.9e-10 71.6 232 29.3
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 3.3e-09 68.2 203 34.0
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 4.2e-09 67.8 75 49.3
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.2e-08 66.2 75 49.3
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 3.6e-08 64.7 134 36.6
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.8e-07 62.4 503 26.6
SHI13346 Sapria himalayana HOM05D003721 ORTHO05D004303 8.9e-07 60.1 98 44.9
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.5e-06 59.3 113 45.1
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 3.4e-06 58.2 117 40.2


User provided reference genes

Program Settings