Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 1.7e-52 209.1 112 100.0
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 7.4e-48 193.7 112 92.0
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 3.4e-45 184.9 112 88.4
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 3.2e-43 178.3 112 83.9
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 4.2e-35 151.4 102 78.4
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 3.0e-33 145.2 103 73.8
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 1.1e-32 143.3 103 72.8
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 2.6e-32 142.1 99 75.8
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 2.6e-32 142.1 104 72.1
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 3.3e-32 141.7 102 75.5
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 7.4e-32 140.6 111 67.6
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 1.3e-31 139.8 108 68.5
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.3e-31 139.8 108 68.5
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 1.7e-31 139.4 112 68.8
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 2.2e-31 139.0 112 66.1
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 3.7e-31 138.3 98 75.5
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 3.7e-31 138.3 95 74.7
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 4.8e-31 137.9 97 75.3
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 6.3e-31 137.5 99 73.7
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 6.3e-31 137.5 101 74.3
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 8.2e-31 137.1 103 69.9
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 1.8e-30 136.0 97 70.1
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 1.8e-30 136.0 97 73.2
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 2.4e-30 135.6 101 70.3
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 4.1e-30 134.8 99 69.7
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 4.1e-30 134.8 95 75.8
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 4.1e-30 134.8 102 72.5
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 5.3e-30 134.4 102 72.5
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 5.3e-30 134.4 105 68.6
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 5.3e-30 134.4 115 60.9
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 5.3e-30 134.4 106 67.9
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 6.9e-30 134.0 105 65.7
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 1.2e-29 133.3 97 73.2
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 2.0e-29 132.5 97 71.1
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 2.0e-29 132.5 97 74.2
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 2.0e-29 132.5 105 64.8
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 4.5e-29 131.3 106 67.0
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 5.9e-29 131.0 109 68.8
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 1.0e-28 130.2 111 64.0
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 1.0e-28 130.2 111 64.0
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 1.7e-28 129.4 106 64.2
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 6.5e-28 127.5 111 63.1
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 6.5e-28 127.5 102 70.6
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 6.5e-28 127.5 103 68.9
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 8.5e-28 127.1 112 64.3
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 1.4e-27 126.3 109 67.0
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 1.9e-27 125.9 97 71.1
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 5.5e-27 124.4 104 67.3
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 7.2e-27 124.0 97 71.1
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 7.2e-27 124.0 105 65.7
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 1.2e-26 123.2 97 62.9
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 1.2e-26 123.2 103 67.0
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 1.6e-26 122.9 109 64.2
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 4.7e-26 121.3 102 69.6
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 6.1e-26 120.9 92 67.4
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 6.1e-26 120.9 109 62.4
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 8.0e-26 120.6 109 62.4
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 1.0e-25 120.2 95 62.1
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 1.0e-25 120.2 69 91.3
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 1.0e-25 120.2 102 66.7
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 1.4e-25 119.8 93 63.4
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 1.4e-25 119.8 102 66.7
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 1.4e-25 119.8 104 61.5
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 1.8e-25 119.4 89 73.0
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 2.3e-25 119.0 95 62.1
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 2.3e-25 119.0 92 65.2
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 2.3e-25 119.0 92 65.2
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 2.3e-25 119.0 102 66.7
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 3.0e-25 118.6 104 56.7
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 5.2e-25 117.9 92 64.1
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 5.2e-25 117.9 92 64.1
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 6.7e-25 117.5 92 63.0
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 1.1e-24 116.7 99 65.7
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 1.1e-24 116.7 96 65.6
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 2.0e-24 115.9 103 65.0
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 2.6e-24 115.5 77 81.8
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 3.3e-24 115.2 93 67.7
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 4.4e-24 114.8 103 62.1
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 2.2e-23 112.5 101 63.4
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 8.2e-23 110.5 101 59.4
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 4.1e-22 108.2 95 62.1
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 1.2e-21 106.7 118 52.5
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 1.2e-21 106.7 110 53.6
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 1.2e-21 106.7 103 58.3
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 2.0e-21 105.9 80 70.0
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 2.0e-21 105.9 147 46.9
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 2.6e-21 105.5 112 53.6
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 2.2e-20 102.4 70 77.1
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 3.2e-19 98.6 108 50.9
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 5.5e-19 97.8 107 53.3
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 1.2e-18 96.7 73 74.0
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 1.6e-18 96.3 73 67.1
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 2.7e-18 95.5 100 55.0
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 1.8e-17 92.8 88 59.1
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 2.3e-17 92.4 83 65.1
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 5.2e-17 91.3 75 69.3
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 4.4e-16 88.2 60 78.3
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 4.4e-16 88.2 96 51.0
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 3.1e-14 82.0 97 48.5
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 9.1e-14 80.5 90 50.0
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 2.5e-11 72.4 73 56.2
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 5.2e-09 64.7 53 60.4
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 2.0e-08 62.8 108 41.7
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 8.3e-07 57.4 86 41.9


User provided reference genes

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