Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 4.4e-121 438.0 221 100.0
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.3e-117 426.4 221 97.3
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 9.6e-116 420.2 221 95.5
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 9.6e-116 420.2 219 95.9
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.7e-112 409.5 235 90.2
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.5e-105 386.3 219 84.5
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 3.4e-105 385.2 219 84.9
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 7.6e-105 384.0 223 83.9
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 1.1e-103 380.2 223 83.0
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.4e-103 379.0 219 82.2
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 3.2e-103 378.6 217 83.4
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.5e-102 375.2 214 85.0
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 6.0e-102 374.4 220 83.6
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 6.0e-102 374.4 213 85.0
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 7.9e-102 374.0 219 82.2
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.3e-101 373.2 212 84.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.8e-101 372.9 214 84.1
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 5.1e-101 371.3 212 84.0
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 8.7e-101 370.5 219 81.7
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 8.7e-101 370.5 212 83.5
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.5e-100 369.8 223 81.2
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.5e-100 369.8 217 83.4
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.5e-100 369.8 220 82.3
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-100 369.4 216 81.5
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-100 369.4 216 81.5
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-100 369.4 216 81.5
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.9e-100 369.4 213 84.5
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.5e-100 369.0 216 82.9
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 2.5e-100 369.0 217 82.5
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.5e-100 369.0 217 82.5
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 3.3e-100 368.6 218 82.1
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 3.3e-100 368.6 214 82.7
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 5.6e-100 367.9 220 81.8
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 7.4e-100 367.5 219 80.4
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 9.6e-100 367.1 219 80.4
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 3.7e-99 365.2 218 79.8
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 3.7e-99 365.2 215 81.9
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 6.2e-99 364.4 213 82.2
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.8e-98 362.8 217 81.1
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 2.4e-98 362.5 217 79.7
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 6.9e-98 360.9 218 78.9
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 9.0e-98 360.5 219 77.6
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 9.0e-98 360.5 212 82.1
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.2e-97 360.1 220 79.1
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.2e-97 360.1 212 82.1
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.2e-97 360.1 217 81.1
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.5e-97 359.8 212 81.1
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 2.0e-97 359.4 219 79.5
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 2.6e-97 359.0 215 80.9
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 2.6e-97 359.0 219 79.0
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.6e-97 359.0 216 80.1
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.5e-97 358.2 210 81.0
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 5.8e-97 357.8 216 78.7
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.8e-97 357.8 219 78.5
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 7.6e-97 357.5 220 78.6
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.7e-96 356.3 219 78.1
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 3.8e-96 355.1 221 77.4
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 1.1e-95 353.6 221 77.8
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 1.9e-95 352.8 221 77.8
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.5e-95 352.4 221 77.4
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 5.5e-95 351.3 221 76.5
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 5.5e-95 351.3 219 77.2
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 7.1e-95 350.9 213 77.9
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.1e-95 350.9 209 79.9
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 9.3e-95 350.5 213 78.4
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 9.3e-95 350.5 217 77.4
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.2e-94 350.1 218 77.5
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.2e-94 350.1 219 77.2
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.6e-94 349.7 209 79.4
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.6e-94 349.7 209 79.4
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.6e-94 349.7 254 69.3
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 2.1e-94 349.4 221 76.0
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 2.1e-94 349.4 213 77.5
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 2.1e-94 349.4 213 77.5
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 4.6e-94 348.2 222 77.5
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 7.9e-94 347.4 216 78.7
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 7.9e-94 347.4 218 77.5
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.8e-93 346.3 209 80.4
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 3.0e-93 345.5 213 78.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 5.7e-92 341.3 259 66.8
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 1.6e-91 339.7 216 75.9
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 8.2e-91 337.4 216 75.5
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.3e-90 334.7 212 76.4
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 5.9e-89 331.3 221 73.3
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 7.6e-89 330.9 209 76.6
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.2e-88 329.3 221 72.4
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.9e-88 328.9 257 65.4
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 5.0e-88 328.2 221 72.4
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 5.0e-88 328.2 221 72.4
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 6.5e-88 327.8 220 73.6
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.1e-87 327.0 209 75.6
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.1e-87 327.0 209 75.6
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 4.2e-87 325.1 210 73.8
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 4.2e-87 325.1 221 71.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.2e-86 323.6 223 71.7
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 2.1e-86 322.8 209 73.2
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 2.1e-86 322.8 209 73.2
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.7e-86 322.4 219 73.1
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 4.6e-86 321.6 209 72.7
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 7.9e-86 320.9 209 72.2
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.3e-85 320.1 185 82.2
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 2.3e-85 319.3 209 71.8
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 3.9e-85 318.5 218 71.1
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 3.9e-85 318.5 219 72.1
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 6.7e-85 317.8 219 72.6
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.6e-81 305.8 213 69.0
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.7e-80 303.1 215 67.9
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 2.2e-80 302.8 221 67.4
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.1e-79 300.4 215 66.5
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.4e-79 300.1 215 67.0
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 6.1e-78 294.7 217 66.4
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 6.1e-78 294.7 176 80.1
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.8e-75 285.8 210 68.1
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 8.2e-75 284.3 210 63.8
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.2e-72 276.2 181 72.9
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 4.1e-66 255.4 214 60.3
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 5.9e-65 251.5 142 84.5
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.0e-57 226.5 132 84.8
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 6.5e-56 221.5 123 84.6
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 2.5e-55 219.5 123 85.4
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 3.2e-55 219.2 124 86.3
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 4.7e-54 215.3 126 84.1
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 3.0e-53 212.6 222 49.5
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 2.0e-49 199.9 155 65.8
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.8e-43 179.5 124 68.5
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 1.0e-40 171.0 129 68.2
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 8.6e-40 167.9 115 70.4
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 8.0e-38 161.4 108 73.1
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 8.9e-37 157.9 92 80.4
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.1e-34 151.0 91 78.0
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.5e-31 139.8 91 70.3
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.2e-30 137.5 91 71.4
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 3.6e-30 136.0 164 45.1
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 4.7e-30 135.6 219 37.9
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 4.4e-28 129.0 202 38.6
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 5.8e-28 128.6 92 71.7
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.7e-27 127.1 189 38.1
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 6.4e-27 125.2 219 35.6
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.4e-26 124.0 78 71.8
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 3.5e-25 119.4 187 36.4
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 8.6e-24 114.8 65 83.1
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 1.5e-23 114.0 190 38.4
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.1e-22 110.2 88 62.5
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 1.1e-21 107.8 198 36.4
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.4e-21 107.5 71 67.6
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.8e-21 107.1 75 70.7
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.6e-20 103.2 210 34.3
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 2.6e-20 103.2 60 80.0
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 3.4e-20 102.8 194 35.6
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.3e-19 100.9 83 62.7
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 4.9e-19 99.0 170 33.5
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.9e-18 97.1 63 74.6
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 4.1e-18 95.9 56 78.6
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 9.2e-18 94.7 59 78.0
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.2e-17 94.4 50 88.0
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 8.6e-16 88.2 68 64.7
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 1.5e-15 87.4 69 65.2
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 2.5e-15 86.7 86 55.8
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 4.0e-13 79.3 68 60.3
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 5.2e-13 79.0 46 76.1
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 6.8e-13 78.6 65 61.5
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 8.9e-13 78.2 64 62.5
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.6e-12 76.6 59 66.1
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 7.6e-12 75.1 57 66.7
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 7.6e-12 75.1 66 60.6
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 8.4e-11 71.6 57 64.9
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 1.9e-10 70.5 57 63.2
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 1.3e-08 64.3 39 76.9
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 3.3e-07 59.7 48 60.4


User provided reference genes

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