Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 9.5e-101 370.2 185 100.0
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 1.7e-73 279.6 179 77.7
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 1.6e-71 273.1 168 79.8
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 5.5e-64 248.1 171 73.7
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 5.6e-61 238.0 175 69.1
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 1.4e-59 233.4 174 69.0
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 3.1e-59 232.3 174 67.8
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 4.0e-59 231.9 171 69.0
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 5.3e-59 231.5 171 69.0
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 6.9e-59 231.1 180 63.9
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 6.9e-59 231.1 174 67.2
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 9.0e-59 230.7 170 68.8
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 1.5e-58 229.9 169 68.0
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 3.4e-58 228.8 170 68.2
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 4.5e-58 228.4 174 66.7
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 5.8e-58 228.0 174 66.1
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 7.6e-58 227.6 171 66.1
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 1.0e-57 227.3 171 66.7
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 1.0e-57 227.3 174 64.9
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.3e-57 226.9 174 66.1
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 2.2e-57 226.1 177 66.1
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 2.9e-57 225.7 166 68.1
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 3.8e-57 225.3 171 66.1
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 6.5e-57 224.6 174 64.4
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.1e-56 223.8 170 64.1
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-56 223.8 174 64.9
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 1.4e-56 223.4 172 64.0
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 1.4e-56 223.4 174 65.5
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 1.9e-56 223.0 174 64.4
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 2.5e-56 222.6 170 63.5
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 2.5e-56 222.6 175 65.7
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 2.5e-56 222.6 175 65.7
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.2e-56 222.2 174 64.9
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 4.2e-56 221.9 169 65.7
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 4.2e-56 221.9 169 65.7
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 4.2e-56 221.9 173 65.3
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 5.5e-56 221.5 170 63.5
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 5.5e-56 221.5 170 65.3
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 5.5e-56 221.5 167 66.5
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 7.1e-56 221.1 170 63.5
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 7.1e-56 221.1 169 65.1
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 1.2e-55 220.3 172 64.0
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 3.5e-55 218.8 174 65.5
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 4.6e-55 218.4 173 65.3
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 4.6e-55 218.4 170 63.5
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 1.3e-54 216.9 172 62.2
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 3.0e-54 215.7 172 61.0
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 3.9e-54 215.3 171 63.2
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 6.7e-54 214.5 178 59.6
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 8.7e-54 214.2 160 68.1
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 1.9e-53 213.0 178 59.0
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 1.9e-53 213.0 178 59.0
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 1.9e-53 213.0 170 62.9
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 2.5e-53 212.6 134 80.6
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 4.3e-53 211.8 172 59.9
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 5.7e-53 211.5 177 59.3
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 9.6e-53 210.7 161 68.3
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 1.3e-52 210.3 177 58.8
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 1.6e-52 209.9 173 63.0
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 2.1e-52 209.5 175 58.9
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 4.8e-52 208.4 172 59.3
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 1.1e-51 207.2 156 66.7
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 1.4e-51 206.8 174 59.8
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 1.4e-51 206.8 176 59.7
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 1.8e-51 206.5 184 58.7
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 3.1e-51 205.7 178 56.7
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 6.9e-51 204.5 172 57.6
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 6.9e-51 204.5 175 59.4
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 9.0e-51 204.1 163 63.8
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 9.0e-51 204.1 173 57.8
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 1.2e-50 203.8 173 57.8
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 1.5e-50 203.4 176 58.5
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 2.0e-50 203.0 172 57.0
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 4.5e-50 201.8 174 56.3
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 5.9e-50 201.4 170 58.2
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 3.8e-49 198.7 178 55.1
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 6.5e-49 198.0 172 56.4
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 8.5e-49 197.6 174 55.2
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 1.1e-48 197.2 161 58.4
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 1.9e-48 196.4 153 64.7
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 3.2e-48 195.7 172 55.8
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 7.2e-48 194.5 194 57.2
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 2.1e-47 193.0 154 63.6
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 6.1e-47 191.4 169 58.6
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 6.1e-47 191.4 169 56.2
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 2.3e-46 189.5 197 54.3
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 6.7e-46 188.0 147 66.7
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 5.7e-45 184.9 169 55.0
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 3.7e-44 182.2 139 65.5
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 4.8e-44 181.8 169 55.0
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 2.0e-42 176.4 142 61.3
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 2.5e-40 169.5 190 48.4
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 9.4e-40 167.5 138 63.0
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 3.9e-38 162.2 132 59.8
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 4.4e-37 158.7 174 48.3
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 4.8e-36 155.2 138 58.0
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 8.2e-36 154.5 157 51.0
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 1.1e-35 154.1 183 44.3
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 1.2e-34 150.6 132 55.3
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 7.7e-34 147.9 195 43.6
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 8.5e-33 144.4 97 69.1
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 5.5e-32 141.7 174 43.7
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 1.6e-31 140.2 105 67.6
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 4.1e-27 125.6 173 42.2
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 7.7e-26 121.3 132 48.5
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 5.0e-25 118.6 155 45.8
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 1.4e-22 110.5 170 36.5
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 4.4e-21 105.5 157 41.4
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 5.9e-18 95.1 133 41.4
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 1.3e-17 94.0 108 46.3
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 2.9e-17 92.8 155 38.7
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 1.9e-16 90.1 151 34.4
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 4.4e-13 79.0 132 34.8
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 7.7e-10 68.2 48 64.6


User provided reference genes

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