Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 2.0e-121 439.1 224 100.0
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 3.5e-89 332.0 227 76.7
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 4.9e-83 311.6 227 71.8
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 6.4e-83 311.2 227 72.7
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 2.6e-68 262.7 240 61.7
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 2.6e-68 262.7 240 61.7
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 1.1e-66 257.3 188 70.7
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 4.1e-66 255.4 228 61.0
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 1.6e-65 253.4 165 76.4
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 4.6e-65 251.9 183 71.0
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 4.6e-65 251.9 225 61.3
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 6.0e-65 251.5 182 71.4
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 7.8e-65 251.1 213 64.8
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 1.3e-64 250.4 150 79.3
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.9e-64 248.8 149 81.9
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 3.9e-64 248.8 141 82.3
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 5.1e-64 248.4 228 58.8
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 6.6e-64 248.1 193 68.4
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 1.5e-63 246.9 149 81.9
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 1.5e-63 246.9 143 83.2
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.9e-63 246.5 150 80.7
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.9e-63 246.5 149 79.2
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 2.5e-63 246.1 143 81.8
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 2.5e-63 246.1 202 64.9
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.3e-63 245.7 149 81.2
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 4.3e-63 245.4 212 61.8
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 9.5e-63 244.2 224 61.2
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 1.2e-62 243.8 228 59.6
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 1.2e-62 243.8 211 62.6
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 1.2e-62 243.8 217 62.2
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 1.6e-62 243.4 158 74.7
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.6e-62 243.4 135 85.2
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 2.1e-62 243.0 153 78.4
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 2.1e-62 243.0 155 76.1
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 2.8e-62 242.7 228 59.2
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 3.6e-62 242.3 234 58.5
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 4.7e-62 241.9 173 70.5
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 4.7e-62 241.9 135 84.4
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 8.1e-62 241.1 162 76.5
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 8.1e-62 241.1 181 70.7
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.4e-61 240.4 230 60.4
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.4e-61 240.4 156 76.3
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 1.8e-61 240.0 157 75.8
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 2.3e-61 239.6 193 67.4
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.3e-61 239.6 193 67.4
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 2.3e-61 239.6 193 67.4
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 3.1e-61 239.2 225 60.0
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 3.1e-61 239.2 230 60.4
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.1e-61 239.2 221 60.2
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 5.2e-61 238.4 221 59.7
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 6.8e-61 238.0 204 62.3
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.2e-60 237.3 187 65.8
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.2e-60 237.3 187 65.8
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 1.5e-60 236.9 131 84.7
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 2.6e-60 236.1 181 66.3
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 3.4e-60 235.7 144 79.2
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 3.4e-60 235.7 207 62.3
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 4.4e-60 235.3 149 77.2
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 4.4e-60 235.3 149 77.2
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 5.8e-60 235.0 220 60.0
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 7.6e-60 234.6 148 77.0
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 7.6e-60 234.6 151 76.2
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 7.6e-60 234.6 200 62.5
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 7.6e-60 234.6 219 58.4
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 7.6e-60 234.6 168 70.2
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 1.3e-59 233.8 158 72.8
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 1.3e-59 233.8 149 76.5
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 1.7e-59 233.4 180 67.8
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 2.2e-59 233.0 155 74.2
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 2.9e-59 232.6 181 67.4
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 6.4e-59 231.5 124 86.3
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 6.4e-59 231.5 182 67.6
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 8.4e-59 231.1 182 64.8
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 8.4e-59 231.1 182 64.8
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 8.4e-59 231.1 182 64.8
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 1.4e-58 230.3 186 64.5
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 1.4e-58 230.3 191 64.9
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 1.9e-58 229.9 216 60.2
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 1.9e-58 229.9 209 60.8
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 3.2e-58 229.2 217 57.1
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 4.1e-58 228.8 152 73.0
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 5.4e-58 228.4 214 60.7
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 5.4e-58 228.4 137 78.1
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 7.1e-58 228.0 151 73.5
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 9.2e-58 227.6 175 66.3
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 1.2e-57 227.3 220 59.5
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 1.6e-57 226.9 184 64.1
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 2.7e-57 226.1 220 59.5
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 4.6e-57 225.3 151 74.2
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 4.6e-57 225.3 212 57.5
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 6.0e-57 224.9 151 72.8
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 7.8e-57 224.6 140 74.3
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 7.8e-57 224.6 129 82.2
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 1.3e-56 223.8 153 71.9
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 3.9e-56 222.2 133 81.2
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.9e-56 222.2 222 58.6
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 5.1e-56 221.9 192 63.5
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 6.6e-56 221.5 126 83.3
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 8.6e-56 221.1 184 63.0
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 1.5e-55 220.3 167 68.3
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 4.3e-55 218.8 133 78.9
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 4.3e-55 218.8 133 78.9
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 4.3e-55 218.8 169 68.0
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 5.6e-55 218.4 125 80.0
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 7.3e-55 218.0 208 57.2
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 1.2e-54 217.2 167 62.9
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 1.2e-54 217.2 125 80.8
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 2.1e-54 216.5 175 64.6
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 5.8e-52 208.4 133 73.7
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 7.8e-49 198.0 216 52.3
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 3.0e-48 196.1 130 70.0
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 3.9e-48 195.7 158 67.7
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.9e-48 195.7 221 54.3
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 3.9e-48 195.7 128 71.9
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 5.1e-48 195.3 162 63.6
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.6e-47 191.8 141 65.2
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 3.4e-44 182.6 184 54.3
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.3e-43 180.6 158 56.3
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.3e-43 180.6 158 56.3
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.7e-43 180.3 131 63.4
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.2e-36 157.5 93 80.6
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 7.9e-33 144.8 119 65.5
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 1.3e-30 137.5 129 55.0
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 3.7e-30 136.0 77 81.8
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 4.8e-30 135.6 118 59.3
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 1.0e-27 127.9 139 48.9
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 4.3e-23 112.5 124 50.0
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 6.3e-22 108.6 82 67.1
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 2.0e-20 103.6 140 41.4
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 1.0e-19 101.3 60 73.3
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 7.2e-18 95.1 54 77.8
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.0e-16 91.3 50 82.0
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 2.8e-14 83.2 103 47.6
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 1.1e-13 81.3 51 72.5
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.4e-13 80.9 57 64.9
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.0e-12 77.0 119 46.2
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.1e-10 71.2 44 70.5
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 1.2e-09 67.8 74 54.1
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 7.9e-09 65.1 74 48.6
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 2.8e-06 56.6 33 78.8
Pp3c19_3370 Physcomitrium patens HOM05D005836 ORTHO05D007335 2.8e-06 56.6 105 34.3


User provided reference genes

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