Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 5.7e-71 270.8 135 100.0
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 3.1e-40 168.7 123 69.1
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 6.4e-38 161.0 102 75.5
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 3.4e-31 138.7 107 64.5
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 6.4e-30 134.4 99 66.7
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 1.4e-29 133.3 106 64.2
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 3.2e-29 132.1 110 57.3
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 2.1e-28 129.4 109 58.7
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 3.5e-28 128.6 123 52.8
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 6.0e-28 127.9 127 52.0
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 6.0e-28 127.9 127 52.0
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 6.0e-28 127.9 96 64.6
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 7.8e-28 127.5 108 57.4
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 2.3e-27 125.9 88 69.3
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 2.3e-27 125.9 101 59.4
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 1.9e-26 122.9 127 48.8
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 3.3e-26 122.1 117 53.8
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 4.3e-26 121.7 111 55.9
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 4.3e-26 121.7 96 63.5
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 5.6e-26 121.3 93 64.5
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 5.6e-26 121.3 109 56.9
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 1.3e-25 120.2 117 51.3
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 1.3e-25 120.2 107 57.9
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 1.6e-25 119.8 117 53.0
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 2.1e-25 119.4 88 64.8
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 2.1e-25 119.4 109 56.0
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 2.1e-25 119.4 100 58.0
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 4.8e-25 118.2 109 56.0
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 6.2e-25 117.9 109 55.0
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 8.1e-25 117.5 96 58.3
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 8.1e-25 117.5 121 46.3
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 1.4e-24 116.7 111 53.2
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 1.8e-24 116.3 111 53.2
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 5.3e-24 114.8 96 57.3
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 5.3e-24 114.8 96 57.3
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 2.6e-23 112.5 93 53.8
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 3.4e-23 112.1 102 54.9
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 3.4e-23 112.1 89 61.8
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 3.4e-23 112.1 99 55.6
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 5.8e-23 111.3 102 53.9
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 1.3e-22 110.2 88 54.5
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 1.7e-22 109.8 93 57.0
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 1.7e-22 109.8 87 57.5
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 1.7e-22 109.8 91 58.2
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 2.9e-22 109.0 100 51.0
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 2.9e-22 109.0 94 56.4
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 3.8e-22 108.6 68 73.5
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 6.4e-22 107.8 81 60.5
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 1.4e-21 106.7 101 50.5
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 4.6e-20 101.7 88 55.7
CsaV3_5G039910 Cucumis sativus L. HOM05D007718 ORTHO05D009752 1.0e-19 100.5 86 59.3
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 3.0e-19 99.0 85 50.6
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 3.9e-19 98.6 110 47.3
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 3.3e-18 95.5 59 74.6
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 3.3e-18 95.5 86 53.5
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 5.6e-18 94.7 61 72.1
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 1.3e-17 93.6 62 69.4
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 1.3e-17 93.6 62 69.4
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 2.1e-17 92.8 90 51.1
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 2.8e-17 92.4 119 42.0
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 6.2e-17 91.3 61 68.9
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 1.4e-16 90.1 62 64.5
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 1.8e-16 89.7 92 45.7
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 1.8e-16 89.7 77 54.5
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 5.3e-16 88.2 61 60.7
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 5.3e-16 88.2 61 63.9
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 5.3e-16 88.2 42 90.5
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 2.0e-15 86.3 90 51.1
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 3.4e-15 85.5 50 70.0
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 3.4e-15 85.5 62 59.7
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 5.8e-15 84.7 77 57.1
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 5.8e-15 84.7 69 56.5
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 9.9e-15 84.0 138 37.7
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 2.2e-14 82.8 49 71.4
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 2.9e-14 82.4 63 61.9
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 8.4e-14 80.9 74 54.1
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 8.4e-14 80.9 42 81.0
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 8.4e-14 80.9 70 55.7
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 8.4e-14 80.9 65 50.8
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 2.7e-12 75.9 62 59.7
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 1.8e-11 73.2 159 33.3
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 8.7e-11 70.9 81 42.0
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 3.3e-10 68.9 31 90.3
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 2.1e-09 66.2 60 50.0
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.1e-08 63.9 48 62.5
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 2.4e-08 62.8 48 60.4
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 3.4e-07 58.9 36 72.2


User provided reference genes

Program Settings