Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 2.6e-97 359.0 218 100.0
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 1.7e-77 293.1 218 84.4
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 1.1e-76 290.4 218 84.9
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 5.6e-76 288.1 214 86.0
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 5.4e-71 271.6 218 81.7
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 1.4e-34 150.6 205 59.0
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 3.8e-32 142.5 206 61.7
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.0e-32 142.1 206 60.7
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 8.5e-32 141.4 208 59.6
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 2.5e-31 139.8 213 58.7
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 3.2e-31 139.4 206 60.2
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.2e-31 139.0 206 60.2
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 5.5e-31 138.7 206 60.2
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.5e-31 138.7 206 60.2
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.6e-30 137.1 202 43.1
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.1e-30 135.2 208 58.7
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 6.1e-30 135.2 203 46.3
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 6.1e-30 135.2 203 46.3
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 6.1e-30 135.2 206 59.2
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.8e-29 133.7 206 59.7
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 2.3e-29 133.3 201 60.7
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.1e-29 132.1 206 59.2
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 8.8e-29 131.3 193 47.7
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 3.3e-28 129.4 209 48.8
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 7.4e-28 128.3 209 49.8
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 7.4e-28 128.3 209 49.8
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 2.2e-27 126.7 202 48.0
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 3.7e-27 125.9 208 46.2
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.7e-27 125.9 205 47.3
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 3.7e-27 125.9 208 48.6
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 4.8e-27 125.6 204 47.1
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 6.3e-27 125.2 207 58.9
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 6.3e-27 125.2 204 46.6
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 1.8e-26 123.6 205 46.8
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 2.4e-26 123.2 208 47.6
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 2.4e-26 123.2 201 44.3
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 2.4e-26 123.2 208 47.6
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 4.1e-26 122.5 203 52.2
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 6.9e-26 121.7 205 47.8
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 1.2e-25 120.9 202 44.6
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.0e-25 120.2 200 47.0
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 3.4e-25 119.4 202 45.0
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 7.7e-25 118.2 215 56.7
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 1.0e-24 117.9 197 51.8
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 1.0e-24 117.9 205 53.7
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.3e-24 117.5 199 56.8
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.3e-24 117.5 188 48.4
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 2.2e-24 116.7 147 49.0
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 3.8e-24 115.9 197 51.8
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 6.5e-24 115.2 202 57.4
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.5e-24 114.8 207 40.6
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 8.5e-24 114.8 207 40.6
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 8.5e-24 114.8 150 48.7
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.4e-23 114.0 207 42.5
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.4e-23 114.0 207 42.5
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 1.4e-23 114.0 209 40.7
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 1.4e-23 114.0 198 40.4
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.4e-23 114.0 206 39.3
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 2.5e-23 113.2 146 47.9
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 4.2e-23 112.5 205 54.1
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 4.2e-23 112.5 197 50.8
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 7.2e-23 111.7 207 44.9
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 7.2e-23 111.7 193 45.1
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.2e-22 110.9 193 46.1
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 6.1e-22 108.6 196 44.9
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.9e-22 108.2 188 46.3
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 1.0e-21 107.8 146 45.9
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 1.8e-21 107.1 202 37.1
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 3.0e-21 106.3 210 43.8
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 8.8e-21 104.8 192 45.8
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 2.0e-20 103.6 202 45.5
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.0e-20 103.6 212 44.3
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 2.0e-20 103.6 194 44.8
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 3.3e-20 102.8 199 50.3
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.4e-20 102.4 212 44.3
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.4e-20 102.4 212 44.3
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 4.4e-20 102.4 188 44.7
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 4.4e-20 102.4 208 41.8
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 5.7e-20 102.1 198 44.9
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 5.7e-20 102.1 197 50.8
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 5.7e-20 102.1 197 44.2
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.7e-19 100.5 207 41.5
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 2.2e-19 100.1 196 43.4
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.2e-19 100.1 195 44.1
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 2.8e-19 99.8 208 49.5
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.8e-19 99.8 208 43.3
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.7e-19 99.4 207 44.4
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.8e-19 99.0 208 42.8
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.8e-19 99.0 207 44.0
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 6.3e-19 98.6 201 43.8
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.1e-18 97.8 208 42.8
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.1e-18 97.8 202 42.1
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 1.8e-18 97.1 208 39.9
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 2.4e-18 96.7 187 39.0
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 2.4e-18 96.7 193 43.5
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 3.1e-18 96.3 197 43.7
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 7.0e-18 95.1 202 52.0
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 9.1e-18 94.7 209 36.8
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.2e-17 94.4 207 43.5
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.6e-17 94.0 188 44.1
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 2.6e-17 93.2 191 54.5
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.5e-17 92.4 206 50.5
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 4.5e-17 92.4 209 49.3
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.7e-16 90.5 208 38.9
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 2.9e-16 89.7 189 37.0
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.9e-16 89.7 192 38.0
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 2.9e-16 89.7 191 47.1
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.8e-16 89.4 193 45.6
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.0e-16 89.0 193 45.1
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 5.0e-16 89.0 199 47.2
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 6.5e-16 88.6 196 37.8
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.5e-15 86.7 192 37.0
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 4.2e-15 85.9 196 45.4
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.2e-15 85.9 193 44.6
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 5.5e-15 85.5 192 53.1
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 7.2e-15 85.1 197 46.2
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 9.4e-15 84.7 203 38.9
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 1.6e-14 84.0 196 39.8
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 4.7e-14 82.4 196 38.3
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.0e-13 81.3 189 38.1
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.0e-13 81.3 205 36.6
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 1.4e-13 80.9 205 35.1
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 1.8e-13 80.5 203 38.9
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 5.2e-13 79.0 205 36.6
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 6.7e-13 78.6 205 33.7
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.2e-12 77.8 205 34.1
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.2e-12 77.8 202 36.1
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 1.5e-12 77.4 208 35.6
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.5e-12 77.4 209 37.8
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.5e-12 77.4 189 36.5
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.5e-12 77.4 185 36.2
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.6e-12 76.6 204 33.3
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 3.3e-12 76.3 204 33.8
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 4.4e-12 75.9 206 35.0
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 5.7e-12 75.5 205 49.8
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 9.7e-12 74.7 206 35.0
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.7e-11 73.9 192 38.5
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 2.8e-11 73.2 207 38.6
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 3.7e-11 72.8 207 33.8
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 3.7e-11 72.8 203 48.8
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 6.3e-11 72.0 199 34.2
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 6.3e-11 72.0 190 40.0
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 6.3e-11 72.0 138 37.7
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 8.2e-11 71.6 205 39.0
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 1.1e-10 71.2 195 30.8
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 1.8e-10 70.5 199 33.7
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 1.8e-10 70.5 100 72.0
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.4e-10 70.1 207 33.8
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 2.4e-10 70.1 99 67.7
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 2.4e-10 70.1 203 50.2
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 4.1e-10 69.3 206 33.5
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 9.1e-10 68.2 196 34.2
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-09 67.8 206 33.5
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 2.7e-09 66.6 182 30.2
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 2.7e-09 66.6 182 32.4
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.7e-09 66.6 112 48.2
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 3.5e-09 66.2 192 33.3
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 3.5e-09 66.2 197 50.3
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 3.5e-09 66.2 197 34.0
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 4.5e-09 65.9 92 78.3
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.0e-08 64.7 103 42.7
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.7e-08 63.9 196 31.6
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.7e-08 63.9 201 43.8
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 3.8e-08 62.8 204 37.7
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 5.0e-08 62.4 187 36.4
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 5.0e-08 62.4 216 47.2
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.5e-07 58.9 189 31.7
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.5e-07 58.9 189 31.7
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.2e-06 57.8 134 35.8
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 1.6e-06 57.4 95 37.9
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.6e-06 57.4 193 31.1
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.6e-06 56.2 85 42.4


User provided reference genes

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