Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 3.4e-95 351.7 180 100.0
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 7.1e-77 290.8 185 82.2
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 2.1e-76 289.3 186 81.2
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 4.2e-69 265.0 162 83.3
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 6.3e-65 251.1 181 75.7
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 2.6e-58 229.2 181 65.7
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 1.4e-56 223.4 133 82.0
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 3.1e-56 222.2 136 81.6
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 1.5e-55 219.9 162 68.5
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 3.4e-55 218.8 136 80.1
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 3.4e-55 218.8 173 68.8
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 7.7e-55 217.6 165 70.3
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 7.7e-55 217.6 163 71.2
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.0e-54 217.2 173 68.2
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 5.0e-54 214.9 182 62.6
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 5.0e-54 214.9 132 79.5
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 6.5e-54 214.5 135 78.5
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 6.5e-54 214.5 179 64.8
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 6.5e-54 214.5 134 76.9
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 6.5e-54 214.5 186 65.1
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 8.5e-54 214.2 132 79.5
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 1.1e-53 213.8 132 79.5
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 1.9e-53 213.0 132 78.8
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 2.5e-53 212.6 132 79.5
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 4.2e-53 211.8 141 76.6
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 4.2e-53 211.8 125 85.6
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 5.5e-53 211.5 133 78.2
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 1.2e-52 210.3 132 78.8
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 1.6e-52 209.9 182 67.6
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 1.6e-52 209.9 164 66.5
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 1.6e-52 209.9 115 87.8
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 2.1e-52 209.5 134 75.4
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 3.6e-52 208.8 134 76.9
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 4.7e-52 208.4 133 78.2
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 6.1e-52 208.0 135 78.5
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 6.1e-52 208.0 175 66.3
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 7.9e-52 207.6 135 76.3
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 7.9e-52 207.6 141 74.5
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 7.9e-52 207.6 140 76.4
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 1.0e-51 207.2 129 79.1
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 1.4e-51 206.8 187 60.4
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 1.4e-51 206.8 132 80.3
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 1.8e-51 206.5 136 77.2
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 1.8e-51 206.5 136 77.2
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 3.0e-51 205.7 125 84.0
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 3.9e-51 205.3 168 67.9
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 3.9e-51 205.3 137 74.5
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 5.2e-51 204.9 166 69.3
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 5.2e-51 204.9 131 78.6
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 6.7e-51 204.5 166 63.3
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 8.8e-51 204.1 160 66.9
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 1.5e-50 203.4 154 70.1
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 1.5e-50 203.4 122 83.6
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 2.6e-50 202.6 191 61.8
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 3.3e-50 202.2 167 64.7
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 3.3e-50 202.2 178 64.0
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 4.4e-50 201.8 135 75.6
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 4.4e-50 201.8 132 76.5
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 5.7e-50 201.4 168 66.7
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 5.7e-50 201.4 167 64.7
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 1.7e-49 199.9 134 76.1
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 1.7e-49 199.9 134 73.9
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 2.2e-49 199.5 141 73.8
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 2.8e-49 199.1 134 78.4
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 4.8e-49 198.4 117 82.9
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 6.3e-49 198.0 173 64.7
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 1.8e-48 196.4 135 75.6
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 2.4e-48 196.1 176 64.8
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.2e-47 193.7 123 78.9
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 2.6e-47 192.6 125 80.0
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 3.5e-47 192.2 118 82.2
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 4.5e-47 191.8 132 72.7
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.3e-46 190.3 132 72.7
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.7e-46 189.9 132 72.7
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.7e-46 189.9 132 72.7
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 1.7e-46 189.9 116 81.9
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 3.8e-46 188.7 186 58.1
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 3.8e-46 188.7 136 72.1
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 5.0e-46 188.3 132 72.0
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 8.5e-46 187.6 132 72.0
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 1.1e-45 187.2 171 60.8
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 1.1e-45 187.2 132 74.2
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.9e-45 186.4 124 75.8
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.5e-45 186.0 132 72.7
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.5e-45 186.0 132 72.7
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 3.2e-45 185.7 166 65.1
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 3.2e-45 185.7 118 78.0
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 3.2e-45 185.7 142 68.3
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 3.2e-45 185.7 121 79.3
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 5.5e-45 184.9 166 65.1
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 7.2e-45 184.5 169 62.7
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 7.2e-45 184.5 131 70.2
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 7.2e-45 184.5 121 78.5
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 2.7e-44 182.6 167 65.3
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 8.0e-44 181.0 115 78.3
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 2.3e-43 179.5 177 61.0
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 2.3e-43 179.5 107 84.1
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 4.4e-42 175.3 122 76.2
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 5.7e-42 174.9 122 76.2
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 2.2e-41 172.9 122 74.6
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 2.5e-37 159.5 116 65.5
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 9.4e-37 157.5 137 63.5
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 2.1e-36 156.4 141 63.1
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 3.0e-35 152.5 101 74.3
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 1.3e-33 147.1 118 69.5
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 7.0e-32 141.4 88 81.8
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.2e-31 140.6 149 54.4
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 2.5e-29 132.9 116 62.9
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 6.1e-28 128.3 101 67.3
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 1.4e-27 127.1 104 66.3
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 3.0e-27 125.9 80 80.0
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 5.2e-27 125.2 67 85.1
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 2.6e-26 122.9 69 82.6
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 5.7e-26 121.7 75 82.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.2e-25 119.8 109 60.6
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 6.3e-25 118.2 98 63.3
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 6.3e-25 118.2 111 59.5
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.6e-23 113.6 62 85.5
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 4.5e-23 112.1 147 48.3
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 2.5e-21 106.3 67 77.6
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.3e-19 99.8 111 50.5
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.2e-18 97.4 116 50.9
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 4.9e-17 92.0 72 62.5
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 4.9e-17 92.0 60 76.7
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.8e-16 90.1 110 45.5
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 3.2e-16 89.4 61 73.8
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 1.3e-14 84.0 74 64.9
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 6.6e-14 81.6 89 48.3
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 2.0e-10 70.1 60 61.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.2e-07 60.8 89 41.6
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 4.6e-07 58.9 85 43.5


User provided reference genes

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