Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001609 Sechium edule HOM05D000921 ORTHO05D004782 3.4e-158 561.6 286 100.0
ClCG11G014650 Citrullus lanatus HOM05D000921 ORTHO05D004782 5.7e-129 464.5 282 86.2
MELO3C003512.2 Cucumis melo HOM05D000921 ORTHO05D004782 9.2e-127 457.2 283 84.1
CsaV3_3G048070 Cucumis sativus L. HOM05D000921 ORTHO05D004782 2.3e-122 442.6 283 82.0
Prupe.1G534000 Prunus persica HOM05D000921 ORTHO05D004782 1.0e-85 320.9 307 58.6
MD15G1387600 Malus domestica HOM05D000921 ORTHO05D004782 1.7e-85 320.1 310 57.1
QL09p018095 Quercus lobata HOM05D000921 ORTHO05D004782 3.9e-85 318.9 308 56.5
GSVIVG01009194001 Vitis vinifera HOM05D000921 ORTHO05D004782 4.4e-81 305.4 307 55.4
Medtr3g100060 Medicago truncatula HOM05D000921 ORTHO05D004782 5.8e-81 305.1 304 55.6
Glyma.06G097800 Glycine max HOM05D000921 ORTHO05D004782 9.9e-81 304.3 305 54.8
Haze_22475 Corylus avellana HOM05D000921 ORTHO05D004782 1.3e-80 303.9 307 56.0
Lj1g0023313 Lotus japonicus HOM05D000921 ORTHO05D004782 1.7e-80 303.5 299 55.2
CiPaw.07G164000 Carya illinoinensis HOM05D000921 ORTHO05D004782 2.9e-80 302.8 307 56.4
Dinv42602 Davidia involucrata HOM05D000921 ORTHO05D004782 2.4e-79 299.7 308 53.6
TPR.G6323 Trifolium pratense HOM05D000921 ORTHO05D004782 4.2e-79 298.9 305 53.1
Thecc.08G072600 Theobroma cacao HOM05D000921 ORTHO05D004782 1.6e-78 297.0 306 53.9
Phvul.009G035500 Phaseolus vulgaris HOM05D000921 ORTHO05D004782 2.1e-78 296.6 305 53.8
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 3.5e-78 295.8 308 55.5
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 4.6e-78 295.4 308 55.2
Ca_16011_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004782 6.0e-78 295.0 302 54.6
Lalb_Chr23g0270001 Lupinus albus HOM05D000921 ORTHO05D004782 6.0e-78 295.0 308 53.2
Psat5g049440 Pisum sativum HOM05D000921 ORTHO05D004782 6.0e-78 295.0 305 53.4
CANSAT54G2772 Cannabis sativa HOM05D000921 ORTHO05D004782 7.9e-78 294.7 308 54.5
TAR381G0975 Trochodendron aralioides HOM05D000921 ORTHO05D004782 1.3e-77 293.9 308 52.9
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 3.9e-77 292.4 306 55.2
FAN13G0958 Fragaria x ananassa HOM05D000921 ORTHO05D004782 1.1e-76 290.8 306 54.9
Gohir.D06G030750 Gossypium hirsutum HOM05D000921 ORTHO05D004782 1.5e-76 290.4 306 52.9
RcHm_v2.0_Chr7g0235181 Rosa chinensis HOM05D000921 ORTHO05D004782 1.5e-76 290.4 306 54.9
Gorai.010G033800 Gossypium raimondii HOM05D000921 ORTHO05D004782 3.3e-76 289.3 306 52.3
VMungo1309G2985 Vigna mungo HOM05D000921 ORTHO05D004782 3.3e-76 289.3 305 53.8
Potri.002G111000 Populus trichocarpa HOM05D000921 ORTHO05D004782 7.4e-76 288.1 308 51.6
Atru.chr13.992 Acer truncatum HOM05D000921 ORTHO05D004782 9.6e-76 287.7 308 52.9
Gohir.A06G031500 Gossypium hirsutum HOM05D000921 ORTHO05D004782 1.6e-75 287.0 306 52.3
Glyma.04G096100 Glycine max HOM05D000921 ORTHO05D004782 2.8e-75 286.2 305 52.5
TWI56G0737 Tripterygium wilfordii HOM05D000921 ORTHO05D004782 2.8e-75 286.2 306 53.9
Actinidia19246 Actinidia chinensis HOM05D000921 ORTHO05D004782 1.1e-74 284.3 308 51.9
Sabra02G0087600 Salix brachista HOM05D000921 ORTHO05D004782 2.4e-74 283.1 308 50.3
Manes.18G056822 Manihot esculenta HOM05D000921 ORTHO05D004782 6.9e-74 281.6 302 52.3
COL.COLO4_35265 Corchorus olitorius HOM05D000921 ORTHO05D004782 9.0e-74 281.2 329 49.5
Eucgr.F00430 Eucalyptus grandis HOM05D000921 ORTHO05D004782 1.5e-73 280.4 308 51.6
Aqoxy6G00846 Aquilegia oxysepala HOM05D000921 ORTHO05D004782 3.4e-73 279.3 301 52.2
arahy.Tifrunner.gnm1.ann1.YNEA8K Arachis hypogaea HOM05D000921 ORTHO05D004782 3.4e-73 279.3 353 47.0
Ciclev10000002m.g Citrus clementina HOM05D000921 ORTHO05D004782 5.8e-73 278.5 308 51.6
Gorai.005G097000 Gossypium raimondii HOM05D000921 ORTHO05D004782 1.7e-72 276.9 303 51.2
Gohir.D02G086100 Gossypium hirsutum HOM05D000921 ORTHO05D004782 3.8e-72 275.8 303 50.8
Nn5g29852 Nelumbo nucifera HOM05D000921 ORTHO05D004782 1.1e-68 264.2 313 49.2
PGR042G3444 Punica granatum HOM05D000921 ORTHO05D004782 1.5e-68 263.8 307 45.0
Gohir.A02G078801 Gossypium hirsutum HOM05D000921 ORTHO05D004782 3.3e-68 262.7 300 50.0
DCAR_012852 Daucus carota HOM05D000921 ORTHO05D004782 8.1e-67 258.1 308 49.0
CAN.G475.8 Capsicum annuum HOM05D000921 ORTHO05D004782 1.4e-66 257.3 303 51.2
Peaxi162Scf00454g00119 Petunia axillaris HOM05D000921 ORTHO05D004782 1.5e-65 253.8 303 49.5
Nitab4.5_0002391g0010 Nicotiana tabacum HOM05D000921 ORTHO05D004782 2.6e-65 253.1 302 50.0
Sopen04g030240 Solanum pennellii HOM05D000921 ORTHO05D004782 5.8e-65 251.9 302 50.7
ECA246G1489 Erigeron canadensis HOM05D000921 ORTHO05D004782 2.2e-64 250.0 301 46.5
Nitab4.5_0000131g0100 Nicotiana tabacum HOM05D000921 ORTHO05D004782 6.5e-64 248.4 303 49.2
Cc10_g08450 Coffea canephora HOM05D000921 ORTHO05D004782 4.2e-63 245.7 329 44.7
HanXRQChr05g0163481 Helianthus annuus HOM05D000921 ORTHO05D004782 5.5e-63 245.4 302 48.3
Lsat_1_v5_gn_6_107401 Lactuca sativa HOM05D000921 ORTHO05D004782 7.1e-63 245.0 301 47.5
AUR62019100 Chenopodium quinoa HOM05D000921 ORTHO05D004782 1.5e-60 237.3 308 44.8
MSTRG.24432 Avicennia marina HOM05D000921 ORTHO05D004782 5.7e-60 235.3 303 44.9
Migut.N02862 Erythranthe guttata HOM05D000921 ORTHO05D004782 2.1e-59 233.4 301 44.9
SGA_v2.0_scaffold28G11888 Striga asiatica HOM05D000921 ORTHO05D004782 4.8e-59 232.3 302 45.7
AUR62014358 Chenopodium quinoa HOM05D000921 ORTHO05D004782 6.3e-59 231.9 306 43.8
Hund26819 Selenicereus undatus HOM05D000921 ORTHO05D004782 1.4e-58 230.7 307 44.0
CDE02G0144 Ceratophyllum demersum HOM05D000921 ORTHO05D004782 1.8e-58 230.3 286 44.8
Sc06g0003790 Simmondsia chinensis HOM05D000921 ORTHO05D004782 2.0e-57 226.9 306 45.1
MD08G1200500 Malus domestica HOM05D000921 ORTHO05D004782 7.6e-57 224.9 200 58.5
Zm00001eb207540 Zea mays HOM05D000921 ORTHO05D004782 1.7e-56 223.8 320 39.7
HPP92_013154 Vanilla planifolia HOM05D000921 ORTHO05D004782 6.5e-56 221.9 308 44.2
Lj4A739G26 Lonicera japonica HOM05D000921 ORTHO05D004782 8.5e-56 221.5 250 48.4
EL10Ac1g00502 Beta vulgaris HOM05D000921 ORTHO05D004782 3.9e-53 212.6 269 45.0
Rhsim06G0071200 Rhododendron simsii HOM05D000921 ORTHO05D004782 4.3e-52 209.1 347 37.8
Os02g0162766 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 3.1e-50 203.0 326 35.6
unitig_578.g16055 Utricularia gibba HOM05D000921 ORTHO05D004782 2.0e-49 200.3 283 42.0
Duzib116G0480 Durio zibethinus HOM05D000921 ORTHO05D004782 1.6e-46 190.7 306 42.2
ATR0767G173 Amborella trichopoda HOM05D000921 ORTHO05D004782 1.8e-45 187.2 261 43.3
DCAR_019322 Daucus carota HOM05D000921 ORTHO05D004782 3.4e-41 172.9 317 37.5
Os06g0678700 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 3.4e-41 172.9 317 34.7
Ah.05g171390 Amaranthus hybridus HOM05D000921 ORTHO05D004782 3.0e-37 159.8 200 42.5
Oeu028591.1 Olea europaea HOM05D000921 ORTHO05D004782 2.9e-32 143.3 263 36.1
arahy.Tifrunner.gnm1.ann1.KCR83B Arachis hypogaea HOM05D000921 ORTHO05D004782 3.6e-30 136.3 185 43.2
AagrBONN_evm.TU.Sc2ySwM_117.180 Anthoceros agrestis HOM05D000921 ORTHO05D004782 6.5e-24 115.5 250 30.0
Pp3c20_23460 Physcomitrium patens HOM05D000921 ORTHO05D004782 2.5e-23 113.6 247 33.6
Mapoly0001s0542 Marchantia polymorpha HOM05D000921 ORTHO05D004782 5.2e-21 105.9 270 28.1
CBR_g40583 Chara braunii HOM05D000921 ORTHO05D004782 2.4e-18 97.1 211 30.8
vmacro21344 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 1.9e-15 87.4 113 44.2
CSS0006749 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 4.4e-12 76.3 153 32.0
MD08G1200600 Malus domestica HOM05D000921 ORTHO05D004782 7.5e-12 75.5 86 50.0
Ah.05g171400 Amaranthus hybridus HOM05D000921 ORTHO05D004782 3.7e-11 73.2 121 39.7
Cpa.g.sc474.1 Carica papaya HOM05D000921 ORTHO05D004782 6.3e-11 72.4 62 61.3
Nn8g40360 Nelumbo nucifera HOM05D000921 ORTHO05D004782 8.3e-11 72.0 77 46.8
Hma1.2p1_0125F.1_g058740 Hydrangea macrophylla HOM05D000921 ORTHO05D004782 7.0e-10 68.9 62 59.7
Nn1g04217 Nelumbo nucifera HOM05D001236 ORTHO05D001090 9.2e-10 68.6 74 47.3
Lsat_1_v5_gn_3_136420 Lactuca sativa HOM05D001891 ORTHO05D007474 1.1e-07 61.6 98 38.8


User provided reference genes

Program Settings