Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 2.6e-141 505.4 255 100.0
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 4.2e-107 391.7 297 70.4
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 6.3e-103 377.9 297 68.0
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 2.2e-100 369.4 294 68.7
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 1.4e-73 280.4 287 54.4
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 1.5e-72 276.9 287 53.0
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 9.8e-72 274.2 271 54.6
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 1.3e-71 273.9 291 52.2
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 2.8e-71 272.7 294 52.0
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 2.8e-71 272.7 266 57.1
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 3.7e-71 272.3 282 53.2
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 4.9e-71 271.9 283 53.0
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 6.3e-71 271.6 281 53.4
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 8.3e-71 271.2 279 53.0
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 9.2e-70 267.7 279 52.3
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 9.2e-70 267.7 287 51.9
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 9.2e-70 267.7 291 52.9
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 2.0e-69 266.5 296 50.7
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 2.0e-69 266.5 285 53.3
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 1.7e-68 263.5 287 50.5
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 1.7e-68 263.5 284 52.1
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 5.0e-68 261.9 272 52.6
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 6.6e-68 261.5 285 52.3
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 3.3e-67 259.2 279 50.5
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 4.3e-67 258.8 295 50.5
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 4.3e-67 258.8 277 50.9
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 4.3e-67 258.8 275 51.3
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 7.3e-67 258.1 281 52.3
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 9.5e-67 257.7 275 52.4
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 1.2e-66 257.3 276 50.4
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.6e-66 256.9 278 50.0
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 3.6e-66 255.8 281 49.8
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 6.1e-66 255.0 246 54.5
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 1.4e-65 253.8 292 48.6
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 6.8e-65 251.5 301 47.8
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 2.6e-64 249.6 273 51.6
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 3.4e-64 249.2 287 49.8
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 3.4e-64 249.2 276 49.6
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 4.4e-64 248.8 266 51.1
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 5.8e-64 248.4 293 49.1
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 7.5e-64 248.1 288 48.6
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 1.3e-63 247.3 282 49.6
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.7e-63 246.9 293 48.1
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 1.7e-63 246.9 293 48.1
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 2.9e-63 246.1 275 50.5
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 3.7e-63 245.7 291 49.8
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 3.7e-63 245.7 283 49.5
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 6.4e-63 245.0 259 51.7
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 6.4e-63 245.0 350 42.9
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 1.1e-62 244.2 279 49.8
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 1.4e-62 243.8 250 52.0
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 1.9e-62 243.4 296 47.6
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.9e-62 243.4 292 48.3
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 2.4e-62 243.0 270 51.1
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 5.4e-62 241.9 304 47.0
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 5.4e-62 241.9 258 52.7
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 1.6e-61 240.4 275 48.7
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.7e-61 239.6 271 49.8
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 3.5e-61 239.2 305 46.6
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 3.5e-61 239.2 301 45.8
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 4.6e-61 238.8 305 46.6
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 7.8e-61 238.0 289 48.4
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 7.8e-61 238.0 252 48.8
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 7.8e-61 238.0 251 51.0
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.0e-60 237.7 300 46.7
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 1.7e-60 236.9 297 47.1
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 3.0e-60 236.1 288 48.3
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 1.9e-59 233.4 300 46.0
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 2.5e-59 233.0 257 47.9
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 7.3e-59 231.5 305 45.6
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 1.2e-58 230.7 283 46.6
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 2.8e-58 229.6 281 45.9
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 4.0e-57 225.7 251 47.8
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.2e-56 224.2 231 51.1
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 1.5e-56 223.8 229 52.0
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 2.6e-56 223.0 231 50.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 3.4e-56 222.6 204 57.4
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 4.4e-56 222.2 257 47.9
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 9.8e-56 221.1 230 50.4
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 2.9e-55 219.5 236 48.7
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 3.7e-55 219.2 231 51.9
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 4.9e-55 218.8 231 51.5
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.1e-54 217.6 203 57.1
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 2.4e-54 216.5 180 60.0
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 2.7e-53 213.0 173 62.4
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 3.0e-52 209.5 228 49.1
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 2.3e-49 199.9 254 44.5
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 1.5e-48 197.2 215 50.2
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 1.4e-46 190.7 134 66.4
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 3.2e-46 189.5 246 43.1
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 9.2e-46 188.0 203 50.2
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 5.1e-44 182.2 246 43.5
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 8.6e-44 181.4 260 39.2
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 1.5e-43 180.6 217 46.5
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 2.8e-42 176.4 206 47.6
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 8.9e-41 171.4 247 39.7
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 2.0e-40 170.2 124 63.7
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 5.8e-40 168.7 257 40.5
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 1.3e-39 167.5 212 47.6
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 1.7e-39 167.2 205 45.9
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 4.9e-39 165.6 218 46.8
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 7.1e-38 161.8 204 46.1
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 2.4e-30 136.7 167 47.3
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.1e-21 107.1 270 33.0
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 1.2e-16 91.3 185 33.5
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 1.4e-14 84.3 97 43.3
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 2.7e-13 80.1 181 32.0
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 8.2e-10 68.6 170 31.2
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 3.1e-09 66.6 56 55.4
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 4.1e-09 66.2 44 70.5
Haze_10306 Corylus avellana HOM05D000031 ORTHO05D001033 4.5e-08 62.8 78 46.2
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 5.8e-08 62.4 46 63.0
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 1.7e-07 60.8 46 65.2
RcHm_v2.0_Chr6g0248571 Rosa chinensis HOM05D001568 ORTHO05D008804 2.2e-07 60.5 98 37.8
Ca_28940_v3 Cicer arietinum L. HOM05D001568 ORTHO05D148655 5.0e-07 59.3 154 25.3
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.1e-06 58.2 41 65.9


User provided reference genes

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