Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 3.1e-170 601.7 294 100.0
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 2.6e-145 518.8 294 85.7
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.6e-142 509.6 295 84.1
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 7.9e-142 507.3 295 84.1
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 1.7e-139 499.6 294 82.7
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 9.7e-124 447.2 292 75.0
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 2.0e-121 439.5 288 74.3
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 8.5e-120 434.1 288 72.2
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.1e-119 433.7 292 73.3
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.5e-119 433.3 288 72.9
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 2.7e-118 429.1 285 74.4
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 5.2e-117 424.9 296 70.3
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 4.4e-116 421.8 291 70.8
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.7e-116 421.4 296 72.0
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 7.5e-116 421.0 281 73.3
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.3e-115 420.2 270 76.3
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.3e-115 420.2 293 69.6
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.7e-115 419.9 291 70.4
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.2e-115 419.5 265 76.6
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 4.8e-115 418.3 292 70.5
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 6.3e-115 417.9 293 71.7
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 6.3e-115 417.9 289 70.2
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 8.3e-115 417.5 293 71.7
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 4.1e-114 415.2 263 74.1
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 4.1e-114 415.2 293 70.0
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.2e-113 413.7 292 70.2
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.2e-113 413.7 294 70.4
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 2.0e-113 412.9 293 68.3
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 4.5e-113 411.8 287 71.1
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 7.7e-113 411.0 294 70.4
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.0e-112 410.6 294 69.7
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.9e-112 409.1 277 71.1
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 3.8e-112 408.7 297 69.0
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 8.5e-112 407.5 298 67.1
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.5e-111 406.8 281 70.5
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.9e-111 406.4 293 69.3
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.2e-111 405.2 292 69.2
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 7.2e-111 404.4 287 68.3
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 9.4e-111 404.1 290 68.3
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 9.4e-111 404.1 290 68.3
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 1.2e-110 403.7 289 69.2
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 2.7e-110 402.5 280 70.7
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 4.7e-110 401.7 273 70.7
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.1e-110 401.4 291 67.4
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 8.0e-110 401.0 292 68.5
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.4e-109 400.2 287 67.6
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.4e-109 400.2 282 69.9
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.8e-109 399.8 294 68.0
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 1.8e-109 399.8 295 66.8
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 5.2e-109 398.3 286 68.5
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.2e-108 397.1 295 67.1
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 2.6e-108 396.0 295 66.1
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 3.4e-108 395.6 286 68.2
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 4.4e-108 395.2 268 72.4
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 4.4e-108 395.2 267 71.2
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 1.3e-107 393.7 287 67.2
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 1.3e-107 393.7 290 65.9
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 1.7e-107 393.3 292 67.1
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.8e-107 392.5 264 72.7
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 4.9e-107 391.7 288 67.4
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 6.3e-107 391.3 301 65.1
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.8e-106 389.8 298 63.4
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 2.4e-106 389.4 298 63.4
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 5.4e-106 388.3 288 67.0
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 9.2e-106 387.5 278 66.9
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 4.5e-105 385.2 268 68.7
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.3e-104 383.6 293 65.2
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.9e-104 382.5 288 67.4
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 3.8e-104 382.1 293 63.8
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.5e-103 380.2 245 75.1
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 4.3e-103 378.6 232 77.2
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 7.3e-103 377.9 289 64.4
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 1.2e-102 377.1 289 66.4
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.6e-102 376.7 296 62.2
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 6.1e-102 374.8 240 75.4
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 6.1e-102 374.8 299 61.5
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 3.0e-101 372.5 298 61.4
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.5e-100 370.2 281 65.1
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 2.6e-100 369.4 299 60.5
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 9.8e-100 367.5 287 65.2
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 7.8e-97 357.8 292 64.0
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.6e-96 354.8 226 76.1
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 8.6e-96 354.4 221 78.3
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 4.3e-95 352.1 284 63.0
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 1.0e-93 347.4 291 61.5
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.4e-93 347.1 228 75.9
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 3.1e-93 345.9 284 63.0
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 6.8e-93 344.7 269 63.9
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 7.5e-92 341.3 373 48.5
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.7e-91 340.1 284 58.5
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 6.4e-91 338.2 271 59.0
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 2.4e-90 336.3 259 59.1
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 3.5e-89 332.4 288 57.6
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 7.8e-89 331.3 233 69.5
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 1.0e-88 330.9 227 71.8
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 2.0e-84 316.6 264 56.4
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.3e-83 313.9 282 56.0
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 1.9e-82 310.1 213 70.4
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 7.1e-82 308.1 277 56.0
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.6e-81 307.0 283 54.8
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 2.3e-80 303.1 286 54.9
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 2.3e-80 303.1 291 55.0
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.5e-79 300.4 269 55.0
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 1.9e-79 300.1 285 53.7
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 1.9e-79 300.1 285 53.7
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 1.9e-79 300.1 285 53.7
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 2.5e-79 299.7 271 55.0
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 3.3e-79 299.3 268 54.5
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 4.3e-79 298.9 269 55.8
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 7.3e-79 298.1 260 57.3
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.8e-77 293.5 238 60.5
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.6e-76 289.7 209 67.0
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 2.1e-73 280.0 240 60.4
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 4.6e-73 278.9 273 51.3
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.7e-70 268.9 248 53.6
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.0e-68 263.5 226 56.2
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.7e-65 253.1 201 60.2
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 4.3e-63 245.7 228 53.5
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.3e-59 234.2 199 56.8
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 7.1e-58 228.4 275 48.0
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 2.5e-55 219.9 230 49.6
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 4.8e-54 215.7 149 69.1
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 8.4e-51 204.9 178 61.2
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 5.5e-50 202.2 226 44.2
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 2.9e-43 179.9 148 62.2
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 9.6e-39 164.9 267 36.7
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 1.1e-34 151.4 131 55.7
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 3.6e-33 146.4 98 74.5
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 5.0e-27 125.9 209 34.0
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 4.1e-21 106.3 166 37.3
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.4e-20 103.2 172 34.9
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 1.6e-17 94.4 77 58.4
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 1.5e-15 87.8 123 44.7
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 2.0e-15 87.4 60 68.3
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 7.4e-15 85.5 65 69.2
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 4.5e-12 76.3 43 74.4
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 5.0e-11 72.8 85 47.1
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 1.4e-08 64.7 223 26.5
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 2.8e-06 57.0 40 55.0


User provided reference genes

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