Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 1.2e-203 713.0 383 100.0
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 2.6e-177 625.5 378 90.2
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 3.4e-177 625.2 378 90.7
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 4.4e-177 624.8 411 84.4
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 9.0e-170 600.5 385 84.9
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 2.4e-167 592.4 381 83.5
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 3.3e-164 582.0 380 81.8
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 3.3e-164 582.0 377 82.8
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.8e-162 576.2 382 81.2
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.4e-162 575.9 384 82.0
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 5.3e-162 574.7 378 81.2
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 9.0e-162 573.9 384 81.8
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.5e-161 573.2 384 81.5
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 2.6e-161 572.4 382 80.6
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 3.4e-161 572.0 378 82.0
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.7e-160 569.7 383 82.0
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.2e-160 569.3 384 81.2
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 2.2e-160 569.3 384 80.5
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 2.9e-160 568.9 383 80.4
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 3.8e-160 568.5 346 86.1
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 4.9e-160 568.2 383 80.2
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 4.9e-160 568.2 346 85.8
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.1e-159 567.0 382 81.4
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.4e-159 566.6 368 83.4
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.9e-159 566.2 383 80.9
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 4.2e-159 565.1 366 82.5
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 4.2e-159 565.1 346 85.5
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 4.2e-159 565.1 334 86.5
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 5.4e-159 564.7 384 80.5
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 7.1e-159 564.3 374 82.4
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 7.1e-159 564.3 334 88.0
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 7.1e-159 564.3 381 81.9
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 7.1e-159 564.3 373 82.3
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.2e-158 563.5 347 86.7
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.2e-158 563.5 378 81.0
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.6e-158 563.1 347 86.7
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 2.7e-158 562.4 383 81.2
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 4.6e-158 561.6 380 79.7
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 4.6e-158 561.6 381 81.4
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 6.0e-158 561.2 383 79.9
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 7.9e-158 560.8 379 80.5
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.0e-157 560.5 379 80.7
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.3e-157 560.1 375 81.6
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 1.3e-157 560.1 382 80.4
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 1.8e-157 559.7 384 79.7
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.8e-157 559.7 383 78.3
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 2.3e-157 559.3 376 81.4
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 3.9e-157 558.5 384 78.9
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 3.9e-157 558.5 383 79.1
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 3.9e-157 558.5 370 82.2
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 5.1e-157 558.1 342 86.3
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 8.7e-157 557.4 380 79.2
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 8.7e-157 557.4 383 79.4
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.1e-156 557.0 371 80.6
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.1e-156 557.0 382 79.3
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 1.1e-156 557.0 368 82.3
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.9e-156 556.2 391 78.8
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.5e-156 555.8 378 79.1
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 3.3e-156 555.4 387 77.8
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 4.3e-156 555.1 377 80.9
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 4.3e-156 555.1 377 80.9
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 5.6e-156 554.7 362 82.6
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.3e-155 553.5 360 81.7
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.3e-155 553.5 324 88.3
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 1.6e-155 553.1 378 78.8
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.6e-155 553.1 363 81.3
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 6.2e-155 551.2 392 77.6
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 8.1e-155 550.8 377 80.1
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 8.1e-155 550.8 382 78.3
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 8.1e-155 550.8 380 78.4
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.4e-154 550.1 379 77.6
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.4e-154 550.1 380 77.6
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.8e-154 549.7 359 81.6
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.8e-154 549.7 359 81.6
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 3.1e-154 548.9 355 81.7
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 5.3e-154 548.1 381 78.7
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 5.3e-154 548.1 382 77.7
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 5.3e-154 548.1 363 80.2
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 9.0e-154 547.4 341 83.9
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 9.0e-154 547.4 380 76.8
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 2.0e-153 546.2 361 82.0
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.4e-153 545.4 378 78.3
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 3.4e-153 545.4 377 79.0
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 4.5e-153 545.0 333 85.6
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 1.0e-152 543.9 389 78.4
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 1.3e-152 543.5 334 84.1
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.9e-152 541.6 386 76.7
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.1e-151 540.4 389 76.3
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.1e-151 540.4 389 76.3
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-151 540.0 386 76.4
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-151 540.0 386 76.4
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 5.5e-151 538.1 360 81.1
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 7.1e-151 537.7 377 77.2
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 7.1e-151 537.7 368 77.4
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 7.1e-151 537.7 381 78.2
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 2.1e-150 536.2 385 75.6
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 6.0e-150 534.6 377 77.2
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.0e-149 533.9 334 82.0
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 1.8e-149 533.1 393 75.6
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 1.8e-149 533.1 373 77.2
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.3e-147 526.9 394 73.6
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.3e-147 526.9 334 81.7
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 1.8e-146 523.1 338 80.5
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.2e-145 520.4 388 74.0
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 7.6e-145 517.7 378 74.3
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 3.8e-144 515.4 297 88.2
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 6.5e-144 514.6 297 88.2
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 2.5e-143 512.7 387 72.4
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 1.2e-142 510.4 349 79.4
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.1e-142 509.6 380 72.6
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 1.3e-141 506.9 322 83.9
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 1.8e-141 506.5 297 87.2
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.5e-140 502.7 408 68.9
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 7.4e-140 501.1 297 86.5
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 4.8e-139 498.4 372 75.0
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 4.5e-137 491.9 333 75.4
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.0e-136 488.4 378 72.0
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 1.9e-135 486.5 365 71.2
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.1e-132 477.2 316 75.9
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 2.5e-132 476.1 326 80.7
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 5.3e-130 468.4 333 76.9
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 2.1e-126 456.4 376 69.1
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 2.7e-126 456.1 361 67.6
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 3.1e-122 442.6 422 60.0
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 4.5e-121 438.7 381 69.0
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 1.5e-119 433.7 246 92.7
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 2.7e-118 429.5 272 84.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 3.1e-114 416.0 316 69.6
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 9.8e-108 394.4 326 68.7
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 6.3e-107 391.7 295 67.5
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 2.4e-106 389.8 367 58.6
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 7.7e-97 358.2 338 58.0
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 4.9e-91 339.0 198 88.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 5.8e-84 315.5 198 85.4
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 5.8e-84 315.5 198 85.4
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.7e-75 287.3 166 88.0
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 9.2e-66 255.0 294 46.6
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.7e-65 253.4 378 47.1
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 9.9e-60 235.0 293 45.4
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.4e-58 230.3 126 88.9
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.7e-57 226.9 332 43.1
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 6.2e-54 215.7 154 75.3
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 2.4e-50 203.8 198 63.1
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.1e-49 200.7 178 63.5
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 6.2e-38 162.5 213 49.8
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.8e-37 161.0 149 60.4
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 6.3e-30 136.0 80 86.2
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 6.9e-29 132.5 133 58.6
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.1e-26 125.2 88 69.3
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 7.9e-17 92.4 75 66.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 2.6e-15 87.4 48 91.7
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 1.2e-12 78.6 90 50.0
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.2e-12 78.6 62 67.7
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 7.7e-12 75.9 54 72.2
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.2e-09 68.6 42 71.4
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 6.1e-09 66.2 43 76.7


User provided reference genes

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