Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 4.3e-203 711.1 352 100.0
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.7e-135 486.5 359 71.3
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 2.7e-120 436.0 361 65.4
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 6.8e-116 421.4 359 63.2
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.9e-78 297.0 354 53.7
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 8.2e-61 238.4 375 40.0
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 3.8e-58 229.6 372 39.5
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 9.7e-54 214.9 382 39.0
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.2e-53 213.8 328 42.7
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 4.8e-53 212.6 369 35.0
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 5.3e-52 209.1 372 38.4
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 7.0e-52 208.8 373 39.1
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 7.0e-52 208.8 376 36.7
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.2e-51 208.0 365 39.7
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 2.0e-51 207.2 370 39.7
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.0e-50 204.9 373 38.3
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.0e-50 204.9 375 37.3
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 3.8e-50 203.0 359 37.9
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 6.5e-50 202.2 365 39.2
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 9.4e-49 198.4 389 35.2
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 2.7e-48 196.8 359 37.0
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.8e-47 194.1 381 36.2
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.3e-47 193.7 356 37.4
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 5.2e-47 192.6 356 37.9
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 6.8e-47 192.2 356 37.6
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 8.8e-47 191.8 343 38.5
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.2e-46 191.4 386 36.3
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.2e-45 187.2 371 35.0
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 1.1e-44 184.9 376 34.0
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 7.0e-44 182.2 364 36.8
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.0e-44 182.2 358 36.0
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 9.1e-44 181.8 354 36.7
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 9.1e-44 181.8 354 36.7
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 1.2e-43 181.4 176 54.5
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 1.6e-43 181.0 354 35.6
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 7.7e-43 178.7 342 36.3
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.0e-42 178.3 382 36.9
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.0e-42 178.3 369 38.2
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.7e-42 177.6 357 35.9
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 2.2e-42 177.2 367 34.9
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.2e-42 177.2 383 35.2
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.0e-42 176.0 366 36.9
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 8.5e-42 175.3 355 38.0
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 9.5e-41 171.8 163 54.6
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 1.6e-40 171.0 366 36.6
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 3.6e-40 169.9 359 36.2
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.8e-39 167.5 383 35.2
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 2.3e-39 167.2 359 35.9
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 6.8e-39 165.6 201 47.3
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.4e-38 163.3 328 37.2
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 3.4e-38 163.3 207 48.8
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 3.4e-38 163.3 207 48.8
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 8.3e-37 158.7 345 37.4
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.8e-36 157.5 347 34.0
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.1e-36 156.8 348 34.8
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 7.0e-36 155.6 360 35.6
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 7.0e-36 155.6 343 37.0
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 2.7e-35 153.7 344 35.2
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.5e-35 153.3 364 32.7
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.5e-35 153.3 352 34.1
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 4.5e-35 152.9 336 34.8
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 4.5e-35 152.9 198 43.9
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.0e-34 151.8 340 34.4
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.0e-34 151.8 345 35.1
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 1.3e-34 151.4 352 36.1
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-34 151.4 352 34.9
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.3e-34 150.6 353 34.6
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.9e-34 150.2 352 34.7
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.9e-33 147.5 324 34.9
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 2.5e-33 147.1 176 46.6
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 5.6e-33 146.0 342 34.2
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.6e-33 146.0 344 35.2
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 7.3e-33 145.6 352 34.1
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 7.3e-33 145.6 352 34.1
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 7.3e-33 145.6 352 34.1
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 9.5e-33 145.2 339 33.6
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 2.1e-32 144.1 138 52.9
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.6e-32 143.3 334 35.3
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 3.6e-32 143.3 168 45.8
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 8.0e-32 142.1 342 31.6
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 8.0e-32 142.1 235 41.3
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 8.0e-32 142.1 235 41.3
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 8.0e-32 142.1 391 31.7
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.0e-31 141.7 344 33.4
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.0e-31 141.7 156 46.8
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.0e-31 141.7 202 42.6
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.4e-31 141.4 236 40.7
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.8e-31 141.0 235 40.9
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 3.0e-31 140.2 371 30.7
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.5e-30 137.9 356 33.4
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.5e-30 137.9 183 44.3
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.5e-30 137.9 344 32.3
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.0e-30 137.5 341 34.0
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 2.0e-30 137.5 372 32.0
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 2.6e-30 137.1 356 31.7
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 4.4e-30 136.3 363 32.5
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 4.4e-30 136.3 159 47.2
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 4.4e-30 136.3 370 31.9
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 5.7e-30 136.0 155 48.4
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 7.5e-30 135.6 386 31.1
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 7.5e-30 135.6 374 30.7
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 9.8e-30 135.2 179 44.1
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.7e-29 134.4 420 29.3
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 4.9e-29 132.9 330 33.9
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 8.3e-29 132.1 375 32.8
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 2.4e-28 130.6 111 58.6
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 2.4e-28 130.6 111 58.6
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.4e-28 130.6 147 49.0
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 4.1e-28 129.8 353 31.2
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 4.1e-28 129.8 146 47.3
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.2e-27 128.3 378 29.4
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.5e-27 126.7 212 37.3
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 7.8e-27 125.6 367 33.2
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 7.8e-27 125.6 178 39.9
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 1.3e-26 124.8 163 39.3
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 3.9e-26 123.2 156 43.6
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 6.6e-26 122.5 339 32.4
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 5.6e-25 119.4 346 32.1
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.6e-24 117.9 130 50.0
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.2e-22 111.7 91 60.4
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.2e-22 111.7 341 31.7
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 3.4e-22 110.2 265 29.4
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 9.8e-22 108.6 257 32.7
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.7e-21 107.8 147 40.1
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 3.7e-21 106.7 120 47.5
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.9e-17 94.4 202 34.2
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.5e-17 94.0 274 31.0
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 4.7e-16 89.7 174 33.3
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 4.0e-15 86.7 281 31.0
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 2.6e-14 84.0 188 34.6
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 2.2e-13 80.9 92 46.7
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 6.0e-11 72.8 102 39.2
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.7e-10 71.2 117 35.9
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 1.1e-09 68.6 119 41.2
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.5e-09 68.2 79 48.1
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 4.3e-09 66.6 82 43.9
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 6.2e-08 62.8 135 28.1
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 5.2e-07 59.7 97 36.1
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.5e-06 58.2 55 54.5
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 2.0e-06 57.8 134 29.9
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 5.8e-06 56.2 128 32.0


User provided reference genes

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